miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 54127 0.78 0.147679
Target:  5'- --gGCUGCGGacgggcuCUGCCCCGGcGGCGCCg -3'
miRNA:   3'- ucaUGAUGCC-------GACGGGGCCcCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 61821 0.78 0.161826
Target:  5'- uGGUGCUcuacGCGGCgucgacgguggccGCCCCGGGGAC-CCu -3'
miRNA:   3'- -UCAUGA----UGCCGa------------CGGGGCCCCUGcGG- -5'
29633 3' -60.8 NC_006151.1 + 127835 0.77 0.16749
Target:  5'- cGUACguggcggcgucGCGGCUGCgCCggaGGGGGCGCCg -3'
miRNA:   3'- uCAUGa----------UGCCGACG-GGg--CCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 134422 0.77 0.16749
Target:  5'- --aGCUGguGCUGCCCCccGGGGGCGCCg -3'
miRNA:   3'- ucaUGAUgcCGACGGGG--CCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 37402 0.77 0.184663
Target:  5'- --cGCUACGGCgGCgCCGGGGACuCCc -3'
miRNA:   3'- ucaUGAUGCCGaCGgGGCCCCUGcGG- -5'
29633 3' -60.8 NC_006151.1 + 48565 0.76 0.207801
Target:  5'- gAGUAagagaccCUGCGGcCUGCcgCCCGGGGuGCGCCu -3'
miRNA:   3'- -UCAU-------GAUGCC-GACG--GGGCCCC-UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 72706 0.75 0.223702
Target:  5'- aGGUACUGCGcaaaguGCUccucgGCCCCGaGGGGCGUCc -3'
miRNA:   3'- -UCAUGAUGC------CGA-----CGGGGC-CCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 44376 0.75 0.240062
Target:  5'- gGGuUGCgACGGUcccGCCgCGGGGGCGCCg -3'
miRNA:   3'- -UC-AUGaUGCCGa--CGGgGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 13943 0.75 0.251516
Target:  5'- gGGgGCg--GGC-GCCCCGGGGACGCg -3'
miRNA:   3'- -UCaUGaugCCGaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 73353 0.75 0.25741
Target:  5'- aGGUuCUGCGGCagguUGCCCauguccgucaCGGGGGCGCg -3'
miRNA:   3'- -UCAuGAUGCCG----ACGGG----------GCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 59660 0.74 0.269536
Target:  5'- --cGCUGCGcaGC-GCCUCGGGGACGCg -3'
miRNA:   3'- ucaUGAUGC--CGaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 28832 0.74 0.282118
Target:  5'- ----aUGCGG--GCCCCGGGGACGCg -3'
miRNA:   3'- ucaugAUGCCgaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 127406 0.74 0.282118
Target:  5'- gAGUcg-ACGGgaGCCCgCGGGGuCGCCu -3'
miRNA:   3'- -UCAugaUGCCgaCGGG-GCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 75022 0.74 0.282118
Target:  5'- uGGgGC-ACGGCgaagGgCCCGGGGACGUCc -3'
miRNA:   3'- -UCaUGaUGCCGa---CgGGGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 105444 0.74 0.28793
Target:  5'- aAGUACU-CGGCgcgcgccgggGCCCUGGGcgacuucuuccgcGACGCCg -3'
miRNA:   3'- -UCAUGAuGCCGa---------CGGGGCCC-------------CUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 90736 0.74 0.295162
Target:  5'- cGGUgGCgGCGGC-GCCCuCGGGGGCGgCg -3'
miRNA:   3'- -UCA-UGaUGCCGaCGGG-GCCCCUGCgG- -5'
29633 3' -60.8 NC_006151.1 + 123757 0.73 0.301858
Target:  5'- cGGU-CUuuGGCgcggGCCCCGGGGGCaucgGCCc -3'
miRNA:   3'- -UCAuGAugCCGa---CGGGGCCCCUG----CGG- -5'
29633 3' -60.8 NC_006151.1 + 56101 0.73 0.301858
Target:  5'- gAGUACcGCcgccGCUGCCucgCCGGGGAgGCCu -3'
miRNA:   3'- -UCAUGaUGc---CGACGG---GGCCCCUgCGG- -5'
29633 3' -60.8 NC_006151.1 + 9041 0.73 0.301858
Target:  5'- --cGCcGgGGCgccccgcgUGCUCCGGGGGCGCCg -3'
miRNA:   3'- ucaUGaUgCCG--------ACGGGGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 103848 0.73 0.30867
Target:  5'- cGGgcgGCUGCGcGCgcaGCCCgacgaGGGGACGCUg -3'
miRNA:   3'- -UCa--UGAUGC-CGa--CGGGg----CCCCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.