miRNA display CGI


Results 21 - 40 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 3' -60.8 NC_006151.1 + 103848 0.73 0.30867
Target:  5'- cGGgcgGCUGCGcGCgcaGCCCgacgaGGGGACGCUg -3'
miRNA:   3'- -UCa--UGAUGC-CGa--CGGGg----CCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 99060 0.73 0.315599
Target:  5'- cGUACgugcGCGaGCUGCgCCCGGGcaccguggcgcGGCGCCu -3'
miRNA:   3'- uCAUGa---UGC-CGACG-GGGCCC-----------CUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 2681 0.73 0.337086
Target:  5'- aGGcGCaGCGGCUcgGCCCCGGGG-UGCa -3'
miRNA:   3'- -UCaUGaUGCCGA--CGGGGCCCCuGCGg -5'
29633 3' -60.8 NC_006151.1 + 137092 0.72 0.351992
Target:  5'- cAGgcCUucGCGG-UGCUggCCGGGGACGCCu -3'
miRNA:   3'- -UCauGA--UGCCgACGG--GGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 4134 0.72 0.351992
Target:  5'- --cGCU-CGGCcgggccgGCCCCGGGGAuCGCg -3'
miRNA:   3'- ucaUGAuGCCGa------CGGGGCCCCU-GCGg -5'
29633 3' -60.8 NC_006151.1 + 5846 0.72 0.359619
Target:  5'- gGGgagGCUGCGGagggggacgaGCgCCCGGGGcCGCCg -3'
miRNA:   3'- -UCa--UGAUGCCga--------CG-GGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 19499 0.72 0.359619
Target:  5'- --cGCUcCGGg-GCCUCGGGGACGCa -3'
miRNA:   3'- ucaUGAuGCCgaCGGGGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 40030 0.72 0.359619
Target:  5'- --aGCgucCGcGCcGCCgCCGGGGGCGCCg -3'
miRNA:   3'- ucaUGau-GC-CGaCGG-GGCCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 138615 0.72 0.36736
Target:  5'- --cGCU-CGGCgaggacGCCgCCGGGGGCGCg -3'
miRNA:   3'- ucaUGAuGCCGa-----CGG-GGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 81356 0.72 0.36736
Target:  5'- --cGCgccCGGg-GCCCCGGcGGGCGCCa -3'
miRNA:   3'- ucaUGau-GCCgaCGGGGCC-CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 136408 0.72 0.375216
Target:  5'- gAGcgGCUACGcGCgggGCCCCGcGGcGGCGCa -3'
miRNA:   3'- -UCa-UGAUGC-CGa--CGGGGC-CC-CUGCGg -5'
29633 3' -60.8 NC_006151.1 + 13382 0.72 0.383183
Target:  5'- -----cGCGGCacccGCCuCCGGGGACGCg -3'
miRNA:   3'- ucaugaUGCCGa---CGG-GGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 13663 0.72 0.383183
Target:  5'- -----cGCGGCacccGCCuCCGGGGACGCg -3'
miRNA:   3'- ucaugaUGCCGa---CGG-GGCCCCUGCGg -5'
29633 3' -60.8 NC_006151.1 + 119109 0.71 0.391263
Target:  5'- cGUACgugagccgcGCGGCcgGCCUCguGGGGGCGCUg -3'
miRNA:   3'- uCAUGa--------UGCCGa-CGGGG--CCCCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 87557 0.71 0.399453
Target:  5'- cAGgcCU-CGGUcucgGCCCCGGcGGACGUCu -3'
miRNA:   3'- -UCauGAuGCCGa---CGGGGCC-CCUGCGG- -5'
29633 3' -60.8 NC_006151.1 + 3680 0.71 0.399453
Target:  5'- cGGg---GCGGCggGCCCCGGGcGCGCg -3'
miRNA:   3'- -UCaugaUGCCGa-CGGGGCCCcUGCGg -5'
29633 3' -60.8 NC_006151.1 + 140389 0.71 0.406917
Target:  5'- --aGCUGCGuGCUGCCCgaggaccUGGGGGacuCGCCc -3'
miRNA:   3'- ucaUGAUGC-CGACGGG-------GCCCCU---GCGG- -5'
29633 3' -60.8 NC_006151.1 + 132851 0.71 0.407751
Target:  5'- --cACggGCGGCcGgCCCGGGGccGCGCCc -3'
miRNA:   3'- ucaUGa-UGCCGaCgGGGCCCC--UGCGG- -5'
29633 3' -60.8 NC_006151.1 + 117643 0.71 0.407751
Target:  5'- cGUGC-ACGccgcGCUGCUCCGGGG-CGUCc -3'
miRNA:   3'- uCAUGaUGC----CGACGGGGCCCCuGCGG- -5'
29633 3' -60.8 NC_006151.1 + 28262 0.71 0.416157
Target:  5'- gGGgcCUcacACGuggGCCCCGGGGACGCg -3'
miRNA:   3'- -UCauGA---UGCcgaCGGGGCCCCUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.