miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 5' -57.9 NC_006151.1 + 82015 0.66 0.828567
Target:  5'- --cGCGUGCGCCgccgacagcugGGCGaGGUAgUCGUc -3'
miRNA:   3'- cucUGCACGUGG-----------CCGC-CCAUgAGCAu -5'
29633 5' -57.9 NC_006151.1 + 104582 0.66 0.828567
Target:  5'- cGGACGUGCugcagGCCGGCGGcaGCcgCGg- -3'
miRNA:   3'- cUCUGCACG-----UGGCCGCCcaUGa-GCau -5'
29633 5' -57.9 NC_006151.1 + 112337 0.66 0.820111
Target:  5'- cAGACGcGCACCcGCGGGgGCagGUAg -3'
miRNA:   3'- cUCUGCaCGUGGcCGCCCaUGagCAU- -5'
29633 5' -57.9 NC_006151.1 + 27232 0.66 0.820111
Target:  5'- uGGACGcGCACCuccucggggucgGGCGGGggcccgUACUCGg- -3'
miRNA:   3'- cUCUGCaCGUGG------------CCGCCC------AUGAGCau -5'
29633 5' -57.9 NC_006151.1 + 20135 0.66 0.811487
Target:  5'- gGGGGCGgGCGCC-GCGGGggcgGCgCGUGg -3'
miRNA:   3'- -CUCUGCaCGUGGcCGCCCa---UGaGCAU- -5'
29633 5' -57.9 NC_006151.1 + 78682 0.66 0.811487
Target:  5'- uGGACGgGCucuacGCCGGcCGGGgcCUCGUc -3'
miRNA:   3'- cUCUGCaCG-----UGGCC-GCCCauGAGCAu -5'
29633 5' -57.9 NC_006151.1 + 72512 0.66 0.811487
Target:  5'- aAGACacUGaCGCgGGCGGGUGC-CGUGu -3'
miRNA:   3'- cUCUGc-AC-GUGgCCGCCCAUGaGCAU- -5'
29633 5' -57.9 NC_006151.1 + 133796 0.66 0.802701
Target:  5'- gGAGGCGUGCAgcauCCGGgugcacgucCGGGUGg-CGUAa -3'
miRNA:   3'- -CUCUGCACGU----GGCC---------GCCCAUgaGCAU- -5'
29633 5' -57.9 NC_006151.1 + 39466 0.66 0.802701
Target:  5'- -cGcCGUGCGCUGGCccGGGUGCcgCGa- -3'
miRNA:   3'- cuCuGCACGUGGCCG--CCCAUGa-GCau -5'
29633 5' -57.9 NC_006151.1 + 101227 0.66 0.793762
Target:  5'- uGGACGggGC-CCGGCGGGgGCaUGUGc -3'
miRNA:   3'- cUCUGCa-CGuGGCCGCCCaUGaGCAU- -5'
29633 5' -57.9 NC_006151.1 + 97812 0.66 0.793762
Target:  5'- cGGcCGUGCGCCGGuCGcGGUAgUUGg- -3'
miRNA:   3'- cUCuGCACGUGGCC-GC-CCAUgAGCau -5'
29633 5' -57.9 NC_006151.1 + 54919 0.67 0.775461
Target:  5'- --cGCGUGCA-CGGCGaGGUGCUggCGUGc -3'
miRNA:   3'- cucUGCACGUgGCCGC-CCAUGA--GCAU- -5'
29633 5' -57.9 NC_006151.1 + 122395 0.67 0.766115
Target:  5'- cGGGCGcGCGCUGGCGGc-GCUCGc- -3'
miRNA:   3'- cUCUGCaCGUGGCCGCCcaUGAGCau -5'
29633 5' -57.9 NC_006151.1 + 69842 0.67 0.766115
Target:  5'- --cGCGUGCggGCCGGCaGG-ACUCGUc -3'
miRNA:   3'- cucUGCACG--UGGCCGcCCaUGAGCAu -5'
29633 5' -57.9 NC_006151.1 + 39063 0.67 0.74708
Target:  5'- aGGACGUGCGCgUGGUG-GUGCUCu-- -3'
miRNA:   3'- cUCUGCACGUG-GCCGCcCAUGAGcau -5'
29633 5' -57.9 NC_006151.1 + 90652 0.67 0.737408
Target:  5'- uGGGCGUGUACaugcgcggggCGGCGGGccGCUUGUc -3'
miRNA:   3'- cUCUGCACGUG----------GCCGCCCa-UGAGCAu -5'
29633 5' -57.9 NC_006151.1 + 27380 0.68 0.727645
Target:  5'- -cGACGgGCGagaaCGGCGGGgagggcacggGCUCGUAc -3'
miRNA:   3'- cuCUGCaCGUg---GCCGCCCa---------UGAGCAU- -5'
29633 5' -57.9 NC_006151.1 + 20843 0.68 0.727645
Target:  5'- cAGAgGUcGUACuCGGCGGcGUACUCGc- -3'
miRNA:   3'- cUCUgCA-CGUG-GCCGCC-CAUGAGCau -5'
29633 5' -57.9 NC_006151.1 + 94526 0.68 0.7178
Target:  5'- gGAGGCGUGUAacuucccgUCGGCGGG--CUCGg- -3'
miRNA:   3'- -CUCUGCACGU--------GGCCGCCCauGAGCau -5'
29633 5' -57.9 NC_006151.1 + 142145 0.68 0.677787
Target:  5'- -cGAUGccUGCGCCGGCgcaGGGgGCUCGUc -3'
miRNA:   3'- cuCUGC--ACGUGGCCG---CCCaUGAGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.