Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29633 | 5' | -57.9 | NC_006151.1 | + | 131859 | 0.72 | 0.487959 |
Target: 5'- cGAGACGcGCGCCGGCGGcGUcgGgUCGc- -3' miRNA: 3'- -CUCUGCaCGUGGCCGCC-CA--UgAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 98414 | 0.71 | 0.516791 |
Target: 5'- cGAGACGgGCACCugcgaGGCGGccGUGCUCGc- -3' miRNA: 3'- -CUCUGCaCGUGG-----CCGCC--CAUGAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 69209 | 0.7 | 0.555237 |
Target: 5'- cGGGGCccGCGCCGGCcgccccaggcgguGGaGUGCUCGUAg -3' miRNA: 3'- -CUCUGcaCGUGGCCG-------------CC-CAUGAGCAU- -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 127938 | 0.7 | 0.556235 |
Target: 5'- cGAGACGgGCACgGGCcaguucaGGUACUCGg- -3' miRNA: 3'- -CUCUGCaCGUGgCCGc------CCAUGAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 5361 | 0.7 | 0.596501 |
Target: 5'- -cGGCGcgGCGCCGGCGGGgcuguCUCu-- -3' miRNA: 3'- cuCUGCa-CGUGGCCGCCCau---GAGcau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 100059 | 0.69 | 0.616817 |
Target: 5'- cGGGGuCGUGCGCgCGGCcgccgaGGUGCUCGa- -3' miRNA: 3'- -CUCU-GCACGUG-GCCGc-----CCAUGAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 54987 | 0.69 | 0.637178 |
Target: 5'- --cACG-GCGCCGGUGaaGGUGCUCGUc -3' miRNA: 3'- cucUGCaCGUGGCCGC--CCAUGAGCAu -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 142145 | 0.68 | 0.677787 |
Target: 5'- -cGAUGccUGCGCCGGCgcaGGGgGCUCGUc -3' miRNA: 3'- cuCUGC--ACGUGGCCG---CCCaUGAGCAu -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 94526 | 0.68 | 0.7178 |
Target: 5'- gGAGGCGUGUAacuucccgUCGGCGGG--CUCGg- -3' miRNA: 3'- -CUCUGCACGU--------GGCCGCCCauGAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 20843 | 0.68 | 0.727645 |
Target: 5'- cAGAgGUcGUACuCGGCGGcGUACUCGc- -3' miRNA: 3'- cUCUgCA-CGUG-GCCGCC-CAUGAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 27380 | 0.68 | 0.727645 |
Target: 5'- -cGACGgGCGagaaCGGCGGGgagggcacggGCUCGUAc -3' miRNA: 3'- cuCUGCaCGUg---GCCGCCCa---------UGAGCAU- -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 90652 | 0.67 | 0.737408 |
Target: 5'- uGGGCGUGUACaugcgcggggCGGCGGGccGCUUGUc -3' miRNA: 3'- cUCUGCACGUG----------GCCGCCCa-UGAGCAu -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 39063 | 0.67 | 0.74708 |
Target: 5'- aGGACGUGCGCgUGGUG-GUGCUCu-- -3' miRNA: 3'- cUCUGCACGUG-GCCGCcCAUGAGcau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 122395 | 0.67 | 0.766115 |
Target: 5'- cGGGCGcGCGCUGGCGGc-GCUCGc- -3' miRNA: 3'- cUCUGCaCGUGGCCGCCcaUGAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 69842 | 0.67 | 0.766115 |
Target: 5'- --cGCGUGCggGCCGGCaGG-ACUCGUc -3' miRNA: 3'- cucUGCACG--UGGCCGcCCaUGAGCAu -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 54919 | 0.67 | 0.775461 |
Target: 5'- --cGCGUGCA-CGGCGaGGUGCUggCGUGc -3' miRNA: 3'- cucUGCACGUgGCCGC-CCAUGA--GCAU- -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 101227 | 0.66 | 0.793762 |
Target: 5'- uGGACGggGC-CCGGCGGGgGCaUGUGc -3' miRNA: 3'- cUCUGCa-CGuGGCCGCCCaUGaGCAU- -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 97812 | 0.66 | 0.793762 |
Target: 5'- cGGcCGUGCGCCGGuCGcGGUAgUUGg- -3' miRNA: 3'- cUCuGCACGUGGCC-GC-CCAUgAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 39466 | 0.66 | 0.802701 |
Target: 5'- -cGcCGUGCGCUGGCccGGGUGCcgCGa- -3' miRNA: 3'- cuCuGCACGUGGCCG--CCCAUGa-GCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 133796 | 0.66 | 0.802701 |
Target: 5'- gGAGGCGUGCAgcauCCGGgugcacgucCGGGUGg-CGUAa -3' miRNA: 3'- -CUCUGCACGU----GGCC---------GCCCAUgaGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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