Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29633 | 5' | -57.9 | NC_006151.1 | + | 20135 | 0.66 | 0.811487 |
Target: 5'- gGGGGCGgGCGCC-GCGGGggcgGCgCGUGg -3' miRNA: 3'- -CUCUGCaCGUGGcCGCCCa---UGaGCAU- -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 78682 | 0.66 | 0.811487 |
Target: 5'- uGGACGgGCucuacGCCGGcCGGGgcCUCGUc -3' miRNA: 3'- cUCUGCaCG-----UGGCC-GCCCauGAGCAu -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 72512 | 0.66 | 0.811487 |
Target: 5'- aAGACacUGaCGCgGGCGGGUGC-CGUGu -3' miRNA: 3'- cUCUGc-AC-GUGgCCGCCCAUGaGCAU- -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 27232 | 0.66 | 0.820111 |
Target: 5'- uGGACGcGCACCuccucggggucgGGCGGGggcccgUACUCGg- -3' miRNA: 3'- cUCUGCaCGUGG------------CCGCCC------AUGAGCau -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 112337 | 0.66 | 0.820111 |
Target: 5'- cAGACGcGCACCcGCGGGgGCagGUAg -3' miRNA: 3'- cUCUGCaCGUGGcCGCCCaUGagCAU- -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 82015 | 0.66 | 0.828567 |
Target: 5'- --cGCGUGCGCCgccgacagcugGGCGaGGUAgUCGUc -3' miRNA: 3'- cucUGCACGUGG-----------CCGC-CCAUgAGCAu -5' |
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29633 | 5' | -57.9 | NC_006151.1 | + | 104582 | 0.66 | 0.828567 |
Target: 5'- cGGACGUGCugcagGCCGGCGGcaGCcgCGg- -3' miRNA: 3'- cUCUGCACG-----UGGCCGCCcaUGa-GCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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