miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29633 5' -57.9 NC_006151.1 + 20135 0.66 0.811487
Target:  5'- gGGGGCGgGCGCC-GCGGGggcgGCgCGUGg -3'
miRNA:   3'- -CUCUGCaCGUGGcCGCCCa---UGaGCAU- -5'
29633 5' -57.9 NC_006151.1 + 78682 0.66 0.811487
Target:  5'- uGGACGgGCucuacGCCGGcCGGGgcCUCGUc -3'
miRNA:   3'- cUCUGCaCG-----UGGCC-GCCCauGAGCAu -5'
29633 5' -57.9 NC_006151.1 + 72512 0.66 0.811487
Target:  5'- aAGACacUGaCGCgGGCGGGUGC-CGUGu -3'
miRNA:   3'- cUCUGc-AC-GUGgCCGCCCAUGaGCAU- -5'
29633 5' -57.9 NC_006151.1 + 27232 0.66 0.820111
Target:  5'- uGGACGcGCACCuccucggggucgGGCGGGggcccgUACUCGg- -3'
miRNA:   3'- cUCUGCaCGUGG------------CCGCCC------AUGAGCau -5'
29633 5' -57.9 NC_006151.1 + 112337 0.66 0.820111
Target:  5'- cAGACGcGCACCcGCGGGgGCagGUAg -3'
miRNA:   3'- cUCUGCaCGUGGcCGCCCaUGagCAU- -5'
29633 5' -57.9 NC_006151.1 + 82015 0.66 0.828567
Target:  5'- --cGCGUGCGCCgccgacagcugGGCGaGGUAgUCGUc -3'
miRNA:   3'- cucUGCACGUGG-----------CCGC-CCAUgAGCAu -5'
29633 5' -57.9 NC_006151.1 + 104582 0.66 0.828567
Target:  5'- cGGACGUGCugcagGCCGGCGGcaGCcgCGg- -3'
miRNA:   3'- cUCUGCACG-----UGGCCGCCcaUGa-GCau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.