miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 3' -55 NC_006151.1 + 54987 0.75 0.46928
Target:  5'- -cACGGCGCCGGUgaagGUGC-UCGUCGg -3'
miRNA:   3'- caUGCUGCGGCCGga--CAUGuAGCAGC- -5'
29634 3' -55 NC_006151.1 + 4796 0.75 0.497811
Target:  5'- -cGCGGCGCgguagcgggccgCGGCCUGgcggACGUCGUCc -3'
miRNA:   3'- caUGCUGCG------------GCCGGACa---UGUAGCAGc -5'
29634 3' -55 NC_006151.1 + 90363 0.75 0.517256
Target:  5'- -gGCGACGCCGaGCa---GCAUCGUCGa -3'
miRNA:   3'- caUGCUGCGGC-CGgacaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 6156 0.74 0.567074
Target:  5'- -gACGGCGgccUCGGCCUcGgcgGCGUCGUCGg -3'
miRNA:   3'- caUGCUGC---GGCCGGA-Ca--UGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 138541 0.74 0.577199
Target:  5'- -cGCGuACGCCGGCCUGggcGCGUacuacgcgacCGUCGc -3'
miRNA:   3'- caUGC-UGCGGCCGGACa--UGUA----------GCAGC- -5'
29634 3' -55 NC_006151.1 + 99927 0.72 0.638529
Target:  5'- cUACGGCGCCGGCCUcaucccCAaCGUCa -3'
miRNA:   3'- cAUGCUGCGGCCGGAcau---GUaGCAGc -5'
29634 3' -55 NC_006151.1 + 114456 0.72 0.638529
Target:  5'- -gGCcuGCGCCGGCCaccGCAUCGUCGc -3'
miRNA:   3'- caUGc-UGCGGCCGGacaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 90219 0.72 0.659014
Target:  5'- -cAgGACGCCGGCCgagAUcgCGUCGc -3'
miRNA:   3'- caUgCUGCGGCCGGacaUGuaGCAGC- -5'
29634 3' -55 NC_006151.1 + 117092 0.72 0.679413
Target:  5'- -cGCGuccACGCCGGCCUcGUGCGUCa--- -3'
miRNA:   3'- caUGC---UGCGGCCGGA-CAUGUAGcagc -5'
29634 3' -55 NC_006151.1 + 18702 0.72 0.693603
Target:  5'- -gGCGGCGCCGGCgUcgugacgccguccacGUagaucGCGUCGUCGc -3'
miRNA:   3'- caUGCUGCGGCCGgA---------------CA-----UGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 75827 0.71 0.709696
Target:  5'- -gGCGcACGCCGGCCgugGUcACAgcacccCGUCGa -3'
miRNA:   3'- caUGC-UGCGGCCGGa--CA-UGUa-----GCAGC- -5'
29634 3' -55 NC_006151.1 + 140295 0.71 0.71967
Target:  5'- cGUGCGccgGCGCC-GCCUGcgggacgugcgcUGCAUCGUCa -3'
miRNA:   3'- -CAUGC---UGCGGcCGGAC------------AUGUAGCAGc -5'
29634 3' -55 NC_006151.1 + 89719 0.71 0.729569
Target:  5'- -gGCGGCGCCGGCCgcgGCcgCGg-- -3'
miRNA:   3'- caUGCUGCGGCCGGacaUGuaGCagc -5'
29634 3' -55 NC_006151.1 + 15401 0.71 0.739384
Target:  5'- -gACGACGCCGGCUcGgACAccacCGUCGc -3'
miRNA:   3'- caUGCUGCGGCCGGaCaUGUa---GCAGC- -5'
29634 3' -55 NC_006151.1 + 111457 0.7 0.749104
Target:  5'- ---aGGCGCUGcGUCUGcgagGCGUCGUCGg -3'
miRNA:   3'- caugCUGCGGC-CGGACa---UGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 129979 0.7 0.786862
Target:  5'- -cACGGCGCggaaGGCCU---CGUCGUCGg -3'
miRNA:   3'- caUGCUGCGg---CCGGAcauGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 131136 0.7 0.786862
Target:  5'- -cGCGGCGCCgcGGCCgucauagcCGUCGUCGu -3'
miRNA:   3'- caUGCUGCGG--CCGGacau----GUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 121092 0.7 0.795975
Target:  5'- -gGCGGCGCCGGgCUGcACGaccacUCGcUCGg -3'
miRNA:   3'- caUGCUGCGGCCgGACaUGU-----AGC-AGC- -5'
29634 3' -55 NC_006151.1 + 129023 0.69 0.804939
Target:  5'- -cGCGGCGUCGGCCgcgcgcgcGUACAccUCG-CGg -3'
miRNA:   3'- caUGCUGCGGCCGGa-------CAUGU--AGCaGC- -5'
29634 3' -55 NC_006151.1 + 69648 0.69 0.804939
Target:  5'- cGUGCGGCGCC-GCCgg---GUCGUCGa -3'
miRNA:   3'- -CAUGCUGCGGcCGGacaugUAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.