miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 3' -55 NC_006151.1 + 4796 0.75 0.497811
Target:  5'- -cGCGGCGCgguagcgggccgCGGCCUGgcggACGUCGUCc -3'
miRNA:   3'- caUGCUGCG------------GCCGGACa---UGUAGCAGc -5'
29634 3' -55 NC_006151.1 + 5135 0.66 0.93276
Target:  5'- aGUGgGGCGCCgGGCCgg-ACuccuUCGUCu -3'
miRNA:   3'- -CAUgCUGCGG-CCGGacaUGu---AGCAGc -5'
29634 3' -55 NC_006151.1 + 6156 0.74 0.567074
Target:  5'- -gACGGCGgccUCGGCCUcGgcgGCGUCGUCGg -3'
miRNA:   3'- caUGCUGC---GGCCGGA-Ca--UGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 6233 0.68 0.84724
Target:  5'- -cGCGGCGCCGGgagcCCUGgcUGCcgcCGUCGg -3'
miRNA:   3'- caUGCUGCGGCC----GGAC--AUGua-GCAGC- -5'
29634 3' -55 NC_006151.1 + 15401 0.71 0.739384
Target:  5'- -gACGACGCCGGCUcGgACAccacCGUCGc -3'
miRNA:   3'- caUGCUGCGGCCGGaCaUGUa---GCAGC- -5'
29634 3' -55 NC_006151.1 + 18443 0.67 0.916501
Target:  5'- -gGCGuCGCCcGCCUccuCGUCGUCGu -3'
miRNA:   3'- caUGCuGCGGcCGGAcauGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 18702 0.72 0.693603
Target:  5'- -gGCGGCGCCGGCgUcgugacgccguccacGUagaucGCGUCGUCGc -3'
miRNA:   3'- caUGCUGCGGCCGgA---------------CA-----UGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 19630 0.66 0.942401
Target:  5'- -cACGGCGCCGucGCCgc-GCG-CGUCGa -3'
miRNA:   3'- caUGCUGCGGC--CGGacaUGUaGCAGC- -5'
29634 3' -55 NC_006151.1 + 21976 0.66 0.937216
Target:  5'- gGUGCGGCGCCGGCagcgcccaaagauCUGccugGgGUCGcagUCGg -3'
miRNA:   3'- -CAUGCUGCGGCCG-------------GACa---UgUAGC---AGC- -5'
29634 3' -55 NC_006151.1 + 37034 0.67 0.904467
Target:  5'- -cGCGGCGCuCGGCCUccuCcUCGUCc -3'
miRNA:   3'- caUGCUGCG-GCCGGAcauGuAGCAGc -5'
29634 3' -55 NC_006151.1 + 39354 0.68 0.84724
Target:  5'- -cGCGGCGCCGGCU----CAUCGUg- -3'
miRNA:   3'- caUGCUGCGGCCGGacauGUAGCAgc -5'
29634 3' -55 NC_006151.1 + 39462 0.66 0.9377
Target:  5'- aGUGCGccguGCGCUGGCCcggGUGCcgCGa-- -3'
miRNA:   3'- -CAUGC----UGCGGCCGGa--CAUGuaGCagc -5'
29634 3' -55 NC_006151.1 + 45556 0.66 0.93276
Target:  5'- -cACGACGgCGcGCCcgGgcCAUCGUCc -3'
miRNA:   3'- caUGCUGCgGC-CGGa-CauGUAGCAGc -5'
29634 3' -55 NC_006151.1 + 48135 0.67 0.891493
Target:  5'- -gGCGGCGCUGGggguuCCUGgcaccgGCGUCG-CGg -3'
miRNA:   3'- caUGCUGCGGCC-----GGACa-----UGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 54671 0.66 0.92216
Target:  5'- -cACGACcugGCCGGgcaCCUGcGCGUCGcCGg -3'
miRNA:   3'- caUGCUG---CGGCC---GGACaUGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 54987 0.75 0.46928
Target:  5'- -cACGGCGCCGGUgaagGUGC-UCGUCGg -3'
miRNA:   3'- caUGCUGCGGCCGga--CAUGuAGCAGC- -5'
29634 3' -55 NC_006151.1 + 57714 0.66 0.9377
Target:  5'- -cACGAgCGCCGGCUUG-ACcgCG-CGc -3'
miRNA:   3'- caUGCU-GCGGCCGGACaUGuaGCaGC- -5'
29634 3' -55 NC_006151.1 + 58816 0.68 0.862841
Target:  5'- cGUACG-CGCCGGCCc---CGUCG-CGg -3'
miRNA:   3'- -CAUGCuGCGGCCGGacauGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 64009 0.66 0.92758
Target:  5'- gGUGCGGCGCCaGGCgCccgAUcgCGUCGc -3'
miRNA:   3'- -CAUGCUGCGG-CCG-GacaUGuaGCAGC- -5'
29634 3' -55 NC_006151.1 + 67535 0.68 0.884662
Target:  5'- ---aGGCGCCaGCCg--GCGUCGUUGa -3'
miRNA:   3'- caugCUGCGGcCGGacaUGUAGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.