miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 3' -55 NC_006151.1 + 67745 0.68 0.862841
Target:  5'- -cACGGCGCggCGGCCccgucgggGUGCggCGUCGc -3'
miRNA:   3'- caUGCUGCG--GCCGGa-------CAUGuaGCAGC- -5'
29634 3' -55 NC_006151.1 + 69648 0.69 0.804939
Target:  5'- cGUGCGGCGCC-GCCgg---GUCGUCGa -3'
miRNA:   3'- -CAUGCUGCGGcCGGacaugUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 71953 0.69 0.813747
Target:  5'- -cGCGugGCC-GCCUcgGCGUUGUCGc -3'
miRNA:   3'- caUGCugCGGcCGGAcaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 75827 0.71 0.709696
Target:  5'- -gGCGcACGCCGGCCgugGUcACAgcacccCGUCGa -3'
miRNA:   3'- caUGC-UGCGGCCGGa--CA-UGUa-----GCAGC- -5'
29634 3' -55 NC_006151.1 + 78153 0.67 0.910602
Target:  5'- -gACGACGCCucGGCCgc--CGUgGUCGa -3'
miRNA:   3'- caUGCUGCGG--CCGGacauGUAgCAGC- -5'
29634 3' -55 NC_006151.1 + 78684 0.69 0.830856
Target:  5'- -gACGggcucuACGCCGGCCgggGCcUCGUCGc -3'
miRNA:   3'- caUGC------UGCGGCCGGacaUGuAGCAGC- -5'
29634 3' -55 NC_006151.1 + 80915 0.66 0.942401
Target:  5'- -gACGuCGCC-GCC-GUGCAgCGUCGg -3'
miRNA:   3'- caUGCuGCGGcCGGaCAUGUaGCAGC- -5'
29634 3' -55 NC_006151.1 + 84047 0.68 0.870331
Target:  5'- gGUGCGGCugggggugggGCCGcaCCUGUGCuUCGUCa -3'
miRNA:   3'- -CAUGCUG----------CGGCc-GGACAUGuAGCAGc -5'
29634 3' -55 NC_006151.1 + 84326 0.68 0.862841
Target:  5'- -cGCGACcguGCgCGGCCUcgccgaGUACGUCGcCGg -3'
miRNA:   3'- caUGCUG---CG-GCCGGA------CAUGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 85675 0.67 0.89614
Target:  5'- -gACGGCaaccugcgcuuccuGCUGGCCcacUACGUCGUCGu -3'
miRNA:   3'- caUGCUG--------------CGGCCGGac-AUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 88458 0.67 0.904467
Target:  5'- cGUGCGGCGCCcgagcucgucGGCCacgGUGCuguUgGUCa -3'
miRNA:   3'- -CAUGCUGCGG----------CCGGa--CAUGu--AgCAGc -5'
29634 3' -55 NC_006151.1 + 89719 0.71 0.729569
Target:  5'- -gGCGGCGCCGGCCgcgGCcgCGg-- -3'
miRNA:   3'- caUGCUGCGGCCGGacaUGuaGCagc -5'
29634 3' -55 NC_006151.1 + 90219 0.72 0.659014
Target:  5'- -cAgGACGCCGGCCgagAUcgCGUCGc -3'
miRNA:   3'- caUgCUGCGGCCGGacaUGuaGCAGC- -5'
29634 3' -55 NC_006151.1 + 90363 0.75 0.517256
Target:  5'- -gGCGACGCCGaGCa---GCAUCGUCGa -3'
miRNA:   3'- caUGCUGCGGC-CGgacaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 97385 0.69 0.811121
Target:  5'- -gGgGGCGUCGGCCUcGUccgugccguggaucGCGUUGUCGa -3'
miRNA:   3'- caUgCUGCGGCCGGA-CA--------------UGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 97627 0.68 0.84724
Target:  5'- -aGCGGCGCgCGGCC---AUGUCGUUGg -3'
miRNA:   3'- caUGCUGCG-GCCGGacaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 97810 0.69 0.830856
Target:  5'- -cGCGgccguGCGCCGGUCgcgguaGUugGUCGUCa -3'
miRNA:   3'- caUGC-----UGCGGCCGGa-----CAugUAGCAGc -5'
29634 3' -55 NC_006151.1 + 98014 0.68 0.870331
Target:  5'- -gGCGGCGCCGGCCagGUccGCGggGUgGc -3'
miRNA:   3'- caUGCUGCGGCCGGa-CA--UGUagCAgC- -5'
29634 3' -55 NC_006151.1 + 99927 0.72 0.638529
Target:  5'- cUACGGCGCCGGCCUcaucccCAaCGUCa -3'
miRNA:   3'- cAUGCUGCGGCCGGAcau---GUaGCAGc -5'
29634 3' -55 NC_006151.1 + 101920 0.66 0.92758
Target:  5'- -aGCGGCGCCGGCCcc--CGUgGcCGg -3'
miRNA:   3'- caUGCUGCGGCCGGacauGUAgCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.