miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 3' -55 NC_006151.1 + 133566 0.67 0.891493
Target:  5'- -gACGGCGCCGaCCgGUAggagaagcCGUCGUCa -3'
miRNA:   3'- caUGCUGCGGCcGGaCAU--------GUAGCAGc -5'
29634 3' -55 NC_006151.1 + 106623 0.68 0.884662
Target:  5'- cGUACGACGCCGcggucaccgagcGCCUGgACGcCG-CGg -3'
miRNA:   3'- -CAUGCUGCGGC------------CGGACaUGUaGCaGC- -5'
29634 3' -55 NC_006151.1 + 67535 0.68 0.884662
Target:  5'- ---aGGCGCCaGCCg--GCGUCGUUGa -3'
miRNA:   3'- caugCUGCGGcCGGacaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 98014 0.68 0.870331
Target:  5'- -gGCGGCGCCGGCCagGUccGCGggGUgGc -3'
miRNA:   3'- caUGCUGCGGCCGGa-CA--UGUagCAgC- -5'
29634 3' -55 NC_006151.1 + 84047 0.68 0.870331
Target:  5'- gGUGCGGCugggggugggGCCGcaCCUGUGCuUCGUCa -3'
miRNA:   3'- -CAUGCUG----------CGGCc-GGACAUGuAGCAGc -5'
29634 3' -55 NC_006151.1 + 67745 0.68 0.862841
Target:  5'- -cACGGCGCggCGGCCccgucgggGUGCggCGUCGc -3'
miRNA:   3'- caUGCUGCG--GCCGGa-------CAUGuaGCAGC- -5'
29634 3' -55 NC_006151.1 + 84326 0.68 0.862841
Target:  5'- -cGCGACcguGCgCGGCCUcgccgaGUACGUCGcCGg -3'
miRNA:   3'- caUGCUG---CG-GCCGGA------CAUGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 58816 0.68 0.862841
Target:  5'- cGUACG-CGCCGGCCc---CGUCG-CGg -3'
miRNA:   3'- -CAUGCuGCGGCCGGacauGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 119767 0.68 0.855142
Target:  5'- -gACGugGCCGGCgCgc-GCAUCGgCGa -3'
miRNA:   3'- caUGCugCGGCCG-GacaUGUAGCaGC- -5'
29634 3' -55 NC_006151.1 + 113808 0.68 0.855142
Target:  5'- cUGCGGCGCCacGGCCUcGcGC-UCGUCu -3'
miRNA:   3'- cAUGCUGCGG--CCGGA-CaUGuAGCAGc -5'
29634 3' -55 NC_006151.1 + 6233 0.68 0.84724
Target:  5'- -cGCGGCGCCGGgagcCCUGgcUGCcgcCGUCGg -3'
miRNA:   3'- caUGCUGCGGCC----GGAC--AUGua-GCAGC- -5'
29634 3' -55 NC_006151.1 + 39354 0.68 0.84724
Target:  5'- -cGCGGCGCCGGCU----CAUCGUg- -3'
miRNA:   3'- caUGCUGCGGCCGGacauGUAGCAgc -5'
29634 3' -55 NC_006151.1 + 97627 0.68 0.84724
Target:  5'- -aGCGGCGCgCGGCC---AUGUCGUUGg -3'
miRNA:   3'- caUGCUGCG-GCCGGacaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 123067 0.69 0.839143
Target:  5'- -cGCGACGCCGagcgccggcggcGCCUGUACGcggaccgccucUCG-CGg -3'
miRNA:   3'- caUGCUGCGGC------------CGGACAUGU-----------AGCaGC- -5'
29634 3' -55 NC_006151.1 + 117757 0.69 0.839143
Target:  5'- gGUGCGaaGCGCCGGCCgagGUAUAggcucCGggCGg -3'
miRNA:   3'- -CAUGC--UGCGGCCGGa--CAUGUa----GCa-GC- -5'
29634 3' -55 NC_006151.1 + 109163 0.69 0.830856
Target:  5'- --cCGcCGCCGcaGCCUGUGCAgcuggagggagUCGUCGu -3'
miRNA:   3'- cauGCuGCGGC--CGGACAUGU-----------AGCAGC- -5'
29634 3' -55 NC_006151.1 + 97810 0.69 0.830856
Target:  5'- -cGCGgccguGCGCCGGUCgcgguaGUugGUCGUCa -3'
miRNA:   3'- caUGC-----UGCGGCCGGa-----CAugUAGCAGc -5'
29634 3' -55 NC_006151.1 + 78684 0.69 0.830856
Target:  5'- -gACGggcucuACGCCGGCCgggGCcUCGUCGc -3'
miRNA:   3'- caUGC------UGCGGCCGGacaUGuAGCAGC- -5'
29634 3' -55 NC_006151.1 + 71953 0.69 0.813747
Target:  5'- -cGCGugGCC-GCCUcgGCGUUGUCGc -3'
miRNA:   3'- caUGCugCGGcCGGAcaUGUAGCAGC- -5'
29634 3' -55 NC_006151.1 + 97385 0.69 0.811121
Target:  5'- -gGgGGCGUCGGCCUcGUccgugccguggaucGCGUUGUCGa -3'
miRNA:   3'- caUgCUGCGGCCGGA-CA--------------UGUAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.