miRNA display CGI


Results 61 - 80 of 301 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 3276 0.66 0.752935
Target:  5'- cGCGGCGAUGUgcGCCagGGCgGCCGg -3'
miRNA:   3'- cCGCUGCUGCGgaUGGagCCG-UGGCa -5'
29634 5' -59.5 NC_006151.1 + 21411 0.67 0.743568
Target:  5'- gGGCGguGCGGCGUCUcggGCCUCGggggucGCGgCGUg -3'
miRNA:   3'- -CCGC--UGCUGCGGA---UGGAGC------CGUgGCA- -5'
29634 5' -59.5 NC_006151.1 + 78395 0.67 0.743568
Target:  5'- gGGCGgccACGGCGgCUcucggGCCgCGaGCGCCGUg -3'
miRNA:   3'- -CCGC---UGCUGCgGA-----UGGaGC-CGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 21610 0.67 0.743568
Target:  5'- uGGCGGCGGCGUagGCCcgCGGgAgCGUc -3'
miRNA:   3'- -CCGCUGCUGCGgaUGGa-GCCgUgGCA- -5'
29634 5' -59.5 NC_006151.1 + 82928 0.67 0.743568
Target:  5'- aGGCGcAC-ACGCaCUGCCggaugUGGuCGCCGUa -3'
miRNA:   3'- -CCGC-UGcUGCG-GAUGGa----GCC-GUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 20121 0.67 0.743568
Target:  5'- cGGCGACGGgGCUggggGgCg-GGCGCCGc -3'
miRNA:   3'- -CCGCUGCUgCGGa---UgGagCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 104151 0.67 0.743568
Target:  5'- cGGCuACGACGCCgcggagcugcgccccGCCgccgagcgcgcgcUCGGCGCCa- -3'
miRNA:   3'- -CCGcUGCUGCGGa--------------UGG-------------AGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 104334 0.67 0.740739
Target:  5'- cGUcGCGGCGCCcgucaucgggucgcuCUUCGGCGCCGa -3'
miRNA:   3'- cCGcUGCUGCGGau-------------GGAGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 127551 0.67 0.734109
Target:  5'- gGGCGucgucguCGugGCC-GCCgcCGGCGCCu- -3'
miRNA:   3'- -CCGCu------GCugCGGaUGGa-GCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 122406 0.67 0.734109
Target:  5'- uGGCGGCGcuCGCC-GCCgUGGaCGCCGc -3'
miRNA:   3'- -CCGCUGCu-GCGGaUGGaGCC-GUGGCa -5'
29634 5' -59.5 NC_006151.1 + 113540 0.67 0.734109
Target:  5'- uGGCGcugauGCG-CGCCgcggGCC-CGcGCGCCGUc -3'
miRNA:   3'- -CCGC-----UGCuGCGGa---UGGaGC-CGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 99090 0.67 0.734109
Target:  5'- uGGCG-CGGCGCCUGCgCaCGG-ACCa- -3'
miRNA:   3'- -CCGCuGCUGCGGAUG-GaGCCgUGGca -5'
29634 5' -59.5 NC_006151.1 + 86422 0.67 0.734109
Target:  5'- cGGCGucccuguccucGCGGCGCCUggcGCC-CGGCGaggcccCCGa -3'
miRNA:   3'- -CCGC-----------UGCUGCGGA---UGGaGCCGU------GGCa -5'
29634 5' -59.5 NC_006151.1 + 137914 0.67 0.734109
Target:  5'- -aCGGCGGCGgCUGCCacgGGCGCCu- -3'
miRNA:   3'- ccGCUGCUGCgGAUGGag-CCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 15041 0.67 0.734109
Target:  5'- cGCGuccACGGCGCgCgggGCCcCGGCGCCu- -3'
miRNA:   3'- cCGC---UGCUGCG-Ga--UGGaGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 49842 0.67 0.734109
Target:  5'- cGGCGGCGGCggGCCcGCgCUgGGCGCagcaCGUg -3'
miRNA:   3'- -CCGCUGCUG--CGGaUG-GAgCCGUG----GCA- -5'
29634 5' -59.5 NC_006151.1 + 96560 0.67 0.734109
Target:  5'- cGGCGcGCGugauaaacaGCGCC-GCCUCgcggcgcgaGGCGCCGg -3'
miRNA:   3'- -CCGC-UGC---------UGCGGaUGGAG---------CCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 98537 0.67 0.734109
Target:  5'- cGGCGACGACaccacgGCCgcCCUCaccgaggccgGGCugCGc -3'
miRNA:   3'- -CCGCUGCUG------CGGauGGAG----------CCGugGCa -5'
29634 5' -59.5 NC_006151.1 + 103962 0.67 0.734109
Target:  5'- cGCGGCG-CGCCagcGCgUCGGCgagcuggaggcgGCCGUg -3'
miRNA:   3'- cCGCUGCuGCGGa--UGgAGCCG------------UGGCA- -5'
29634 5' -59.5 NC_006151.1 + 85605 0.67 0.734109
Target:  5'- cGGCG-CGcucgugcccaacGCGCCgccGCCgcgCGGCGCCa- -3'
miRNA:   3'- -CCGCuGC------------UGCGGa--UGGa--GCCGUGGca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.