miRNA display CGI


Results 41 - 60 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 39751 0.66 0.76588
Target:  5'- cGGgGACccggacuuugacgcgGGCGCC-GCCUUcgGGCACCGc -3'
miRNA:   3'- -CCgCUG---------------CUGCGGaUGGAG--CCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 2672 0.66 0.762203
Target:  5'- uGGCGGCagaGGCGCagcGgCUCGGCcCCGg -3'
miRNA:   3'- -CCGCUG---CUGCGga-UgGAGCCGuGGCa -5'
29634 5' -59.5 NC_006151.1 + 40030 0.66 0.762203
Target:  5'- aGCGuCcGCGCCgccGCCgggGGCGCCGUg -3'
miRNA:   3'- cCGCuGcUGCGGa--UGGag-CCGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 122661 0.66 0.762203
Target:  5'- aGCGGCGcgaGCGCCgcGCCgaggugcgcgCGGCgGCCGUg -3'
miRNA:   3'- cCGCUGC---UGCGGa-UGGa---------GCCG-UGGCA- -5'
29634 5' -59.5 NC_006151.1 + 3966 0.66 0.762203
Target:  5'- gGGCcGCG-CGgCgGCCUCGGCgaGCCGg -3'
miRNA:   3'- -CCGcUGCuGCgGaUGGAGCCG--UGGCa -5'
29634 5' -59.5 NC_006151.1 + 68832 0.66 0.762203
Target:  5'- cGCGcCGGCGUgUGCUcgaGGCGCCGc -3'
miRNA:   3'- cCGCuGCUGCGgAUGGag-CCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 106621 0.66 0.762203
Target:  5'- cGCGuACGACGCCg----CGGuCACCGa -3'
miRNA:   3'- cCGC-UGCUGCGGauggaGCC-GUGGCa -5'
29634 5' -59.5 NC_006151.1 + 111312 0.66 0.762203
Target:  5'- cGCGGCGGcCGCgUGCC-CGGgCACgGg -3'
miRNA:   3'- cCGCUGCU-GCGgAUGGaGCC-GUGgCa -5'
29634 5' -59.5 NC_006151.1 + 132309 0.66 0.762203
Target:  5'- cGCGugcaGGCGCCacgagAgCUCGcGCGCCGUg -3'
miRNA:   3'- cCGCug--CUGCGGa----UgGAGC-CGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 52004 0.66 0.752935
Target:  5'- cGGCGugcagcuuGCGccGCGCCagcuCCUCGGCgaagGCCGg -3'
miRNA:   3'- -CCGC--------UGC--UGCGGau--GGAGCCG----UGGCa -5'
29634 5' -59.5 NC_006151.1 + 69469 0.66 0.752935
Target:  5'- gGGCGcCGGCaccgucGCCgccGCCUCGaGCGCCc- -3'
miRNA:   3'- -CCGCuGCUG------CGGa--UGGAGC-CGUGGca -5'
29634 5' -59.5 NC_006151.1 + 102202 0.66 0.752935
Target:  5'- uGGUGgagaACGGCGCCcgcACCcacggggaGGCGCCGUg -3'
miRNA:   3'- -CCGC----UGCUGCGGa--UGGag------CCGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 106140 0.66 0.752935
Target:  5'- uGGCcACGACGCuCUcgcgcACCUUcggGGCGCUGg -3'
miRNA:   3'- -CCGcUGCUGCG-GA-----UGGAG---CCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 35319 0.66 0.752935
Target:  5'- gGGCcaaGAUGGCGC---CCUCGGgGCCGg -3'
miRNA:   3'- -CCG---CUGCUGCGgauGGAGCCgUGGCa -5'
29634 5' -59.5 NC_006151.1 + 63484 0.66 0.752935
Target:  5'- cGGCGGCGGCGCCcgaagaaggugGCCaggugggGGCGCgCGg -3'
miRNA:   3'- -CCGCUGCUGCGGa----------UGGag-----CCGUG-GCa -5'
29634 5' -59.5 NC_006151.1 + 85372 0.66 0.752935
Target:  5'- cGCGuggucccCGGCGCgaACgUCGGCGCCa- -3'
miRNA:   3'- cCGCu------GCUGCGgaUGgAGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 96744 0.66 0.752935
Target:  5'- cGCGACGACGgagGCCaUGGCGgCGUg -3'
miRNA:   3'- cCGCUGCUGCggaUGGaGCCGUgGCA- -5'
29634 5' -59.5 NC_006151.1 + 104406 0.66 0.752935
Target:  5'- cGGCGGCGugcuggcccGCGCC-GCCgcCGGCAUgGg -3'
miRNA:   3'- -CCGCUGC---------UGCGGaUGGa-GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 118099 0.66 0.752935
Target:  5'- aGGCG-CuGCGCCgcgACCUgcUGGCGCUGc -3'
miRNA:   3'- -CCGCuGcUGCGGa--UGGA--GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 50833 0.66 0.752935
Target:  5'- cGGCccGCGcCGCCguccCCUCGGCgGCCGc -3'
miRNA:   3'- -CCGc-UGCuGCGGau--GGAGCCG-UGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.