miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 85050 0.66 0.780404
Target:  5'- gGGCGugacgaccACGGCGCUgcagGCCUgCGgGCGCCuGUa -3'
miRNA:   3'- -CCGC--------UGCUGCGGa---UGGA-GC-CGUGG-CA- -5'
29634 5' -59.5 NC_006151.1 + 100322 0.66 0.780404
Target:  5'- aGgGugGGC-CCUGCCUgGGCACg-- -3'
miRNA:   3'- cCgCugCUGcGGAUGGAgCCGUGgca -5'
29634 5' -59.5 NC_006151.1 + 19277 0.66 0.780404
Target:  5'- uGGCGcGCGGgGCCcACCggggccagCGGCGCgGg -3'
miRNA:   3'- -CCGC-UGCUgCGGaUGGa-------GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 39156 0.66 0.780404
Target:  5'- cGCGccGCGGCgGCCU--CUCGGCGCUGc -3'
miRNA:   3'- cCGC--UGCUG-CGGAugGAGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 77560 0.66 0.780404
Target:  5'- aGCGACGACGUCUucguggacGCCcUGGgGCUGc -3'
miRNA:   3'- cCGCUGCUGCGGA--------UGGaGCCgUGGCa -5'
29634 5' -59.5 NC_006151.1 + 128537 0.66 0.780404
Target:  5'- aGGCcACGGCggGCCcGCCggcgCGGUGCCGc -3'
miRNA:   3'- -CCGcUGCUG--CGGaUGGa---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 130883 0.66 0.780404
Target:  5'- gGGCGGCGGCGgUggagGCggCGGCcgucGCCGUc -3'
miRNA:   3'- -CCGCUGCUGCgGa---UGgaGCCG----UGGCA- -5'
29634 5' -59.5 NC_006151.1 + 18557 0.66 0.780404
Target:  5'- cGGCcGCGAgGCC-GCC-CGGCGgCGg -3'
miRNA:   3'- -CCGcUGCUgCGGaUGGaGCCGUgGCa -5'
29634 5' -59.5 NC_006151.1 + 28180 0.66 0.780404
Target:  5'- gGGCGGCGAgUGCCgucgGCCg-GGcCGCCa- -3'
miRNA:   3'- -CCGCUGCU-GCGGa---UGGagCC-GUGGca -5'
29634 5' -59.5 NC_006151.1 + 136750 0.66 0.779505
Target:  5'- aGCGuCGcGCGCCUcgccccgGCCaUgGGCGCCGg -3'
miRNA:   3'- cCGCuGC-UGCGGA-------UGG-AgCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 106768 0.66 0.778605
Target:  5'- cGCGACGcgcgugaGCGCCUggaccugGCCgCGGCGgCGg -3'
miRNA:   3'- cCGCUGC-------UGCGGA-------UGGaGCCGUgGCa -5'
29634 5' -59.5 NC_006151.1 + 85897 0.66 0.772271
Target:  5'- cGGCGcACGACGCCgugGCCgugcaguacgaggaGGgGCUGg -3'
miRNA:   3'- -CCGC-UGCUGCGGa--UGGag------------CCgUGGCa -5'
29634 5' -59.5 NC_006151.1 + 55198 0.66 0.771362
Target:  5'- aGCGugGACacgucgcaGCCggGCUUCGgGCACCa- -3'
miRNA:   3'- cCGCugCUG--------CGGa-UGGAGC-CGUGGca -5'
29634 5' -59.5 NC_006151.1 + 99731 0.66 0.771362
Target:  5'- aGCG-CGGCGCUcgucgACCUCGcCGCCGc -3'
miRNA:   3'- cCGCuGCUGCGGa----UGGAGCcGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 3696 0.66 0.771362
Target:  5'- gGGCGcGCGGCGCUU-CUUCuuGCGCCGc -3'
miRNA:   3'- -CCGC-UGCUGCGGAuGGAGc-CGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 130269 0.66 0.771362
Target:  5'- cGGCGcGCGGCcCCgagGCCgcgggCGcGCGCCGg -3'
miRNA:   3'- -CCGC-UGCUGcGGa--UGGa----GC-CGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 113201 0.66 0.771362
Target:  5'- cGCaGACgGACGCC-GCCgaggagcgcCGGCACCGc -3'
miRNA:   3'- cCG-CUG-CUGCGGaUGGa--------GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 66556 0.66 0.771362
Target:  5'- cGCGGCcGCGCCgccguggACC-CGGCGCuCGc -3'
miRNA:   3'- cCGCUGcUGCGGa------UGGaGCCGUG-GCa -5'
29634 5' -59.5 NC_006151.1 + 139605 0.66 0.770451
Target:  5'- aGCGGCGGCccguccgggcgcgGCUggggGCCaucCGGCGCCGg -3'
miRNA:   3'- cCGCUGCUG-------------CGGa---UGGa--GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 121088 0.66 0.768626
Target:  5'- gGGCGGCGGCGCCggGCugcacgaccacucgCUCGGggaGCaCGUc -3'
miRNA:   3'- -CCGCUGCUGCGGa-UG--------------GAGCCg--UG-GCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.