miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 75429 0.75 0.290919
Target:  5'- cGGCGugGGCGCgaagCUGCCggcgUGGCGCgCGUa -3'
miRNA:   3'- -CCGCugCUGCG----GAUGGa---GCCGUG-GCA- -5'
29634 5' -59.5 NC_006151.1 + 64217 0.75 0.297554
Target:  5'- cGGCGugGGCGCCUcggcguacaggGCCgcgacggCGGCGCgGg -3'
miRNA:   3'- -CCGCugCUGCGGA-----------UGGa------GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 95292 0.75 0.297554
Target:  5'- cGGCGGCGACGCgCgcgGCC-CGGCGCa-- -3'
miRNA:   3'- -CCGCUGCUGCG-Ga--UGGaGCCGUGgca -5'
29634 5' -59.5 NC_006151.1 + 57518 0.75 0.297554
Target:  5'- cGGCGGCGGCGgCcGCCUCcGGCGCgGc -3'
miRNA:   3'- -CCGCUGCUGCgGaUGGAG-CCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 54120 0.75 0.304305
Target:  5'- cGGCGGCGGCugcggacggGCuCUGCCccggCGGCGCCGc -3'
miRNA:   3'- -CCGCUGCUG---------CG-GAUGGa---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 69432 0.75 0.309791
Target:  5'- aGGCGGCGcCGCCgccguucgcguCCUCGcGCGCCGc -3'
miRNA:   3'- -CCGCUGCuGCGGau---------GGAGC-CGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 6146 0.75 0.311174
Target:  5'- cGGCcgcgagGACGGCgGCCUcgGCCUCGGCGgCGUc -3'
miRNA:   3'- -CCG------CUGCUG-CGGA--UGGAGCCGUgGCA- -5'
29634 5' -59.5 NC_006151.1 + 40143 0.74 0.332483
Target:  5'- cGGCGGCGACgGCCgGCCccgCGGC-CCGc -3'
miRNA:   3'- -CCGCUGCUG-CGGaUGGa--GCCGuGGCa -5'
29634 5' -59.5 NC_006151.1 + 50428 0.74 0.347274
Target:  5'- aGGCGccccuGCG-CGCCggcgGCCUgGGCACCGc -3'
miRNA:   3'- -CCGC-----UGCuGCGGa---UGGAgCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 71951 0.74 0.347274
Target:  5'- aGCG-CGugGCC-GCCUCGGCGuuGUc -3'
miRNA:   3'- cCGCuGCugCGGaUGGAGCCGUggCA- -5'
29634 5' -59.5 NC_006151.1 + 122263 0.74 0.347274
Target:  5'- gGGCGAggccacgcacaGGCGCCUG-CUCGGCugCGUg -3'
miRNA:   3'- -CCGCUg----------CUGCGGAUgGAGCCGugGCA- -5'
29634 5' -59.5 NC_006151.1 + 137130 0.74 0.354844
Target:  5'- cGCGACGGCGCg-GCgCgacgCGGCGCCGg -3'
miRNA:   3'- cCGCUGCUGCGgaUG-Ga---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 97381 0.73 0.362529
Target:  5'- cGGCGGgGGCGUCgGCCUCGuccGUGCCGUg -3'
miRNA:   3'- -CCGCUgCUGCGGaUGGAGC---CGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 88654 0.73 0.37033
Target:  5'- aGCGAgacguUGGCGCUccggACCUCGGUGCCGUu -3'
miRNA:   3'- cCGCU-----GCUGCGGa---UGGAGCCGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 3089 0.73 0.378245
Target:  5'- aGGCGGCGagcaGCGCCgagagGCCgccgCGGCGCgGg -3'
miRNA:   3'- -CCGCUGC----UGCGGa----UGGa---GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 5342 0.73 0.378245
Target:  5'- cGGCGGagGGCGCCcucuCCggcgCGGCGCCGg -3'
miRNA:   3'- -CCGCUg-CUGCGGau--GGa---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 53971 0.73 0.378245
Target:  5'- cGGCGGCGGCGCCU-CCgcgggcgucgCGGCGagcucCCGg -3'
miRNA:   3'- -CCGCUGCUGCGGAuGGa---------GCCGU-----GGCa -5'
29634 5' -59.5 NC_006151.1 + 72871 0.73 0.378245
Target:  5'- aGGCGGCGGCGCCcgUgUCGGCgaugaGCCGc -3'
miRNA:   3'- -CCGCUGCUGCGGauGgAGCCG-----UGGCa -5'
29634 5' -59.5 NC_006151.1 + 70940 0.73 0.386272
Target:  5'- -aCGACGGCGCCU-UCUCGGCggugcgcgugGCCGUc -3'
miRNA:   3'- ccGCUGCUGCGGAuGGAGCCG----------UGGCA- -5'
29634 5' -59.5 NC_006151.1 + 118142 0.73 0.386272
Target:  5'- cGcCGACGACGCCgcgGCggUGGCGCCGc -3'
miRNA:   3'- cC-GCUGCUGCGGa--UGgaGCCGUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.