miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 73786 0.85 0.071205
Target:  5'- gGGCGGCGGCGCgcACCUCGGCGCCc- -3'
miRNA:   3'- -CCGCUGCUGCGgaUGGAGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 122928 0.8 0.145485
Target:  5'- cGGCGACGACGCggacGCCgacggCGGCGCCGc -3'
miRNA:   3'- -CCGCUGCUGCGga--UGGa----GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 118888 0.8 0.149151
Target:  5'- cGGCGGCGAcgcggcCGCCggcgGCCUCGaGCGCCGc -3'
miRNA:   3'- -CCGCUGCU------GCGGa---UGGAGC-CGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 87612 0.79 0.172959
Target:  5'- cGGcCGcCGugGCCUGCCagcgCGGCGCCGa -3'
miRNA:   3'- -CC-GCuGCugCGGAUGGa---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 121957 0.79 0.177242
Target:  5'- cGGCGACGACGCCgagGCCUacuuugaGcGCACCa- -3'
miRNA:   3'- -CCGCUGCUGCGGa--UGGAg------C-CGUGGca -5'
29634 5' -59.5 NC_006151.1 + 137486 0.78 0.18162
Target:  5'- gGGaCGACGACGCCgcccucgccgACUUUGGCGCCGc -3'
miRNA:   3'- -CC-GCUGCUGCGGa---------UGGAGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 65788 0.78 0.186093
Target:  5'- cGGCGAUGGCGCC-GCC-CGGCGCgGa -3'
miRNA:   3'- -CCGCUGCUGCGGaUGGaGCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 56363 0.78 0.190663
Target:  5'- cGGCGcggaagcuACGGCGCCUGCUgcacgUCGGCGCCa- -3'
miRNA:   3'- -CCGC--------UGCUGCGGAUGG-----AGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 40434 0.78 0.200099
Target:  5'- cGGCccGGCGGCGCUUGCCUCcccGGCGCCu- -3'
miRNA:   3'- -CCG--CUGCUGCGGAUGGAG---CCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 128022 0.78 0.204968
Target:  5'- cGGCGACGGCGUCUgcgacGCCcgCGGCAgCGg -3'
miRNA:   3'- -CCGCUGCUGCGGA-----UGGa-GCCGUgGCa -5'
29634 5' -59.5 NC_006151.1 + 97996 0.78 0.204968
Target:  5'- gGGCGGCGugGCCgcguaggCGGCGCCGg -3'
miRNA:   3'- -CCGCUGCugCGGaugga--GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 123035 0.77 0.220193
Target:  5'- uGGCGugGGCGgaCCUGCCggccgCGGCGCUGc -3'
miRNA:   3'- -CCGCugCUGC--GGAUGGa----GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 57236 0.77 0.220193
Target:  5'- aGGCGGCGcGCGCg-GCCUCGGCGuCCGc -3'
miRNA:   3'- -CCGCUGC-UGCGgaUGGAGCCGU-GGCa -5'
29634 5' -59.5 NC_006151.1 + 86527 0.77 0.225478
Target:  5'- uGGUGuACGACGCCUcgcccgagGCCgccgUGGCGCCGUu -3'
miRNA:   3'- -CCGC-UGCUGCGGA--------UGGa---GCCGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 133156 0.76 0.241982
Target:  5'- cGGCGGCGGCGCgggcguggGCCUCGGcCACgCGUc -3'
miRNA:   3'- -CCGCUGCUGCGga------UGGAGCC-GUG-GCA- -5'
29634 5' -59.5 NC_006151.1 + 78132 0.76 0.259481
Target:  5'- cGGCGggccGCgGGCGCCUcggacgacGCCUCGGCcGCCGUg -3'
miRNA:   3'- -CCGC----UG-CUGCGGA--------UGGAGCCG-UGGCA- -5'
29634 5' -59.5 NC_006151.1 + 105037 0.75 0.2844
Target:  5'- aGGCGGCGcUGCUg--CUCGGCGCCGUc -3'
miRNA:   3'- -CCGCUGCuGCGGaugGAGCCGUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 54090 0.75 0.2844
Target:  5'- cGGCGGCGGCGgCgGCCaugUCGGCugCGa -3'
miRNA:   3'- -CCGCUGCUGCgGaUGG---AGCCGugGCa -5'
29634 5' -59.5 NC_006151.1 + 75429 0.75 0.290919
Target:  5'- cGGCGugGGCGCgaagCUGCCggcgUGGCGCgCGUa -3'
miRNA:   3'- -CCGCugCUGCG----GAUGGa---GCCGUG-GCA- -5'
29634 5' -59.5 NC_006151.1 + 54387 0.75 0.290919
Target:  5'- uGGCGcaccuGCGcGCGCgCgGCCUCGGCGCCGa -3'
miRNA:   3'- -CCGC-----UGC-UGCG-GaUGGAGCCGUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.