miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 2301 0.71 0.490759
Target:  5'- cGGCGACGGCGCCcgGggUCaGCACCa- -3'
miRNA:   3'- -CCGCUGCUGCGGa-UggAGcCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 2672 0.66 0.762203
Target:  5'- uGGCGGCagaGGCGCagcGgCUCGGCcCCGg -3'
miRNA:   3'- -CCGCUG---CUGCGga-UgGAGCCGuGGCa -5'
29634 5' -59.5 NC_006151.1 + 3089 0.73 0.378245
Target:  5'- aGGCGGCGagcaGCGCCgagagGCCgccgCGGCGCgGg -3'
miRNA:   3'- -CCGCUGC----UGCGGa----UGGa---GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 3276 0.66 0.752935
Target:  5'- cGCGGCGAUGUgcGCCagGGCgGCCGg -3'
miRNA:   3'- cCGCUGCUGCGgaUGGagCCG-UGGCa -5'
29634 5' -59.5 NC_006151.1 + 3383 0.72 0.454364
Target:  5'- aGGCGGCGAgGgCcGCCUCGGaggGCCGc -3'
miRNA:   3'- -CCGCUGCUgCgGaUGGAGCCg--UGGCa -5'
29634 5' -59.5 NC_006151.1 + 3696 0.66 0.771362
Target:  5'- gGGCGcGCGGCGCUU-CUUCuuGCGCCGc -3'
miRNA:   3'- -CCGC-UGCUGCGGAuGGAGc-CGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 3862 0.7 0.538045
Target:  5'- aGGCcggaGGgGGCGCCcGCCgccgcCGGCGCCGg -3'
miRNA:   3'- -CCG----CUgCUGCGGaUGGa----GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 3966 0.66 0.762203
Target:  5'- gGGCcGCG-CGgCgGCCUCGGCgaGCCGg -3'
miRNA:   3'- -CCGcUGCuGCgGaUGGAGCCG--UGGCa -5'
29634 5' -59.5 NC_006151.1 + 4099 0.7 0.561303
Target:  5'- gGGCGACGagggcgacagaguccGCgGCCUGCCgccgcUCGGCcggGCCGg -3'
miRNA:   3'- -CCGCUGC---------------UG-CGGAUGG-----AGCCG---UGGCa -5'
29634 5' -59.5 NC_006151.1 + 4372 0.67 0.724567
Target:  5'- gGGCcucGACGGuCGCCUcCC-CGGCGCgGg -3'
miRNA:   3'- -CCG---CUGCU-GCGGAuGGaGCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 5064 0.66 0.798105
Target:  5'- aGGCGGagGAgGCCgaggGCCgCGGgGCCGc -3'
miRNA:   3'- -CCGCUg-CUgCGGa---UGGaGCCgUGGCa -5'
29634 5' -59.5 NC_006151.1 + 5342 0.73 0.378245
Target:  5'- cGGCGGagGGCGCCcucuCCggcgCGGCGCCGg -3'
miRNA:   3'- -CCGCUg-CUGCGGau--GGa---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 5622 0.7 0.528451
Target:  5'- aGGgGGCGcCGCCgccGCCg-GGCGCCGa -3'
miRNA:   3'- -CCgCUGCuGCGGa--UGGagCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 6146 0.75 0.311174
Target:  5'- cGGCcgcgagGACGGCgGCCUcgGCCUCGGCGgCGUc -3'
miRNA:   3'- -CCG------CUGCUG-CGGA--UGGAGCCGUgGCA- -5'
29634 5' -59.5 NC_006151.1 + 10202 0.69 0.596663
Target:  5'- cGGCGcggGCGGCGgCUGCagaggCGGCugCGg -3'
miRNA:   3'- -CCGC---UGCUGCgGAUGga---GCCGugGCa -5'
29634 5' -59.5 NC_006151.1 + 10902 0.67 0.720728
Target:  5'- gGGUGcCGGCGCggACCggggucgggcccaCGGCGCCGa -3'
miRNA:   3'- -CCGCuGCUGCGgaUGGa------------GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 13172 0.67 0.691613
Target:  5'- cGgGACGGuCGCCgcgGCCgucucggggcccgCGGCGCCGc -3'
miRNA:   3'- cCgCUGCU-GCGGa--UGGa------------GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 14184 0.71 0.463329
Target:  5'- cGGaCGACGACGgUgACgUCGGCAUCGg -3'
miRNA:   3'- -CC-GCUGCUGCgGaUGgAGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 15041 0.67 0.734109
Target:  5'- cGCGuccACGGCGCgCgggGCCcCGGCGCCu- -3'
miRNA:   3'- cCGC---UGCUGCG-Ga--UGGaGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 15076 0.67 0.703322
Target:  5'- cGCGGCccccuGGCGCCccgacacgcggcGCCUCGGgGCCGa -3'
miRNA:   3'- cCGCUG-----CUGCGGa-----------UGGAGCCgUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.