miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 142893 0.68 0.685733
Target:  5'- aGGCGAacccucgcgGGCGCC-ACCggcgCgGGCACCGa -3'
miRNA:   3'- -CCGCUg--------CUGCGGaUGGa---G-CCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 142138 0.68 0.685733
Target:  5'- uGGCGccCGAUGCCUGCgC-CGGCGCa-- -3'
miRNA:   3'- -CCGCu-GCUGCGGAUG-GaGCCGUGgca -5'
29634 5' -59.5 NC_006151.1 + 140442 0.72 0.416931
Target:  5'- cGUGccCGGCGCCUGCCUCGGCgggaucauggacgcGCUGg -3'
miRNA:   3'- cCGCu-GCUGCGGAUGGAGCCG--------------UGGCa -5'
29634 5' -59.5 NC_006151.1 + 140048 0.67 0.714949
Target:  5'- uGCGGcCGcACGCC-ACCgaggCGGCGCgCGUg -3'
miRNA:   3'- cCGCU-GC-UGCGGaUGGa---GCCGUG-GCA- -5'
29634 5' -59.5 NC_006151.1 + 139926 0.66 0.797233
Target:  5'- gGGCu-CGuCGCCguggGCCgccguccucgaguUCGGCGCCGa -3'
miRNA:   3'- -CCGcuGCuGCGGa---UGG-------------AGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 139842 0.67 0.724567
Target:  5'- cGGCG-CGACccgcgucaacgaGCUcuuUGCCUCGGCGCgGc -3'
miRNA:   3'- -CCGCuGCUG------------CGG---AUGGAGCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 139658 0.66 0.798105
Target:  5'- cGCGGCGggcGCGCCgcccgacagGCCcugCGGCAgCGg -3'
miRNA:   3'- cCGCUGC---UGCGGa--------UGGa--GCCGUgGCa -5'
29634 5' -59.5 NC_006151.1 + 139605 0.66 0.770451
Target:  5'- aGCGGCGGCccguccgggcgcgGCUggggGCCaucCGGCGCCGg -3'
miRNA:   3'- cCGCUGCUG-------------CGGa---UGGa--GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 139281 0.71 0.509459
Target:  5'- cGGCgGACG-CGCCgcCCUCGGCGuCUGc -3'
miRNA:   3'- -CCG-CUGCuGCGGauGGAGCCGU-GGCa -5'
29634 5' -59.5 NC_006151.1 + 139217 0.67 0.695524
Target:  5'- uGGCGGCGACGCUgccGCacaUCGcGCGCg-- -3'
miRNA:   3'- -CCGCUGCUGCGGa--UGg--AGC-CGUGgca -5'
29634 5' -59.5 NC_006151.1 + 138619 0.71 0.463329
Target:  5'- cGGCGAgGACGCC-GCCgggGGCgcGCCGg -3'
miRNA:   3'- -CCGCUgCUGCGGaUGGag-CCG--UGGCa -5'
29634 5' -59.5 NC_006151.1 + 138538 0.69 0.626383
Target:  5'- gGGCG-CGuACGCCgGCCUgGGCGCg-- -3'
miRNA:   3'- -CCGCuGC-UGCGGaUGGAgCCGUGgca -5'
29634 5' -59.5 NC_006151.1 + 138178 0.7 0.567162
Target:  5'- uGGCgGACGugGCCauggcgcccgUGCUgCGGCACCu- -3'
miRNA:   3'- -CCG-CUGCugCGG----------AUGGaGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 137914 0.67 0.734109
Target:  5'- -aCGGCGGCGgCUGCCacgGGCGCCu- -3'
miRNA:   3'- ccGCUGCUGCgGAUGGag-CCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 137740 0.67 0.691613
Target:  5'- cGGUGGcCGGCGCCgacacgguccgcgGCCU-GGCGCgCGUg -3'
miRNA:   3'- -CCGCU-GCUGCGGa------------UGGAgCCGUG-GCA- -5'
29634 5' -59.5 NC_006151.1 + 137663 0.72 0.454364
Target:  5'- cGGCgGACGAgCGCCcGCCgugCGGCuGCCGc -3'
miRNA:   3'- -CCG-CUGCU-GCGGaUGGa--GCCG-UGGCa -5'
29634 5' -59.5 NC_006151.1 + 137486 0.78 0.18162
Target:  5'- gGGaCGACGACGCCgcccucgccgACUUUGGCGCCGc -3'
miRNA:   3'- -CC-GCUGCUGCGGa---------UGGAGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 137130 0.74 0.354844
Target:  5'- cGCGACGGCGCg-GCgCgacgCGGCGCCGg -3'
miRNA:   3'- cCGCUGCUGCGgaUG-Ga---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 137078 0.68 0.646229
Target:  5'- uGGCGcacCGGCGCCagGCCUucgCGGUGCUGg -3'
miRNA:   3'- -CCGCu--GCUGCGGa-UGGA---GCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 137031 0.67 0.695524
Target:  5'- cGGCcuGCcgGACGCgUGCCcccCGGCGCCGg -3'
miRNA:   3'- -CCGc-UG--CUGCGgAUGGa--GCCGUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.