miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29634 5' -59.5 NC_006151.1 + 15400 0.68 0.65614
Target:  5'- --gGACGACGCCgg-CUCGGaCACCa- -3'
miRNA:   3'- ccgCUGCUGCGGaugGAGCC-GUGGca -5'
29634 5' -59.5 NC_006151.1 + 16885 0.7 0.522724
Target:  5'- gGGCG-CGcucgcguccguugccGCGCCcGCCcCGGCGCCGg -3'
miRNA:   3'- -CCGCuGC---------------UGCGGaUGGaGCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 17037 0.71 0.463329
Target:  5'- cGGCGACGAucaCGUCcaggGCgUCGGCGuCCGUc -3'
miRNA:   3'- -CCGCUGCU---GCGGa---UGgAGCCGU-GGCA- -5'
29634 5' -59.5 NC_006151.1 + 17168 0.68 0.646229
Target:  5'- aGGuCGGCGGCGCCcaggauCCacagguggaUCGGgGCCGUg -3'
miRNA:   3'- -CC-GCUGCUGCGGau----GG---------AGCCgUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 17867 0.7 0.547698
Target:  5'- gGGCGAUGAUGCCc-CCgaUCaGCGCCGa -3'
miRNA:   3'- -CCGCUGCUGCGGauGG--AGcCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 17947 0.68 0.6759
Target:  5'- cGGCGGCGucuccgGCGCCcGCCUgcCGGCGuCCc- -3'
miRNA:   3'- -CCGCUGC------UGCGGaUGGA--GCCGU-GGca -5'
29634 5' -59.5 NC_006151.1 + 18313 0.68 0.65614
Target:  5'- aGCGG-GGCGCCU-CCUCggGGCGCaCGUa -3'
miRNA:   3'- cCGCUgCUGCGGAuGGAG--CCGUG-GCA- -5'
29634 5' -59.5 NC_006151.1 + 18557 0.66 0.780404
Target:  5'- cGGCcGCGAgGCC-GCC-CGGCGgCGg -3'
miRNA:   3'- -CCGcUGCUgCGGaUGGaGCCGUgGCa -5'
29634 5' -59.5 NC_006151.1 + 18693 0.69 0.606554
Target:  5'- gGGCGcgcggGCGGCGCCgGCgUCGuGaCGCCGUc -3'
miRNA:   3'- -CCGC-----UGCUGCGGaUGgAGC-C-GUGGCA- -5'
29634 5' -59.5 NC_006151.1 + 18999 0.68 0.636308
Target:  5'- cGCGGCG-CGCCaccaGCCgcgCGcGCGCCGg -3'
miRNA:   3'- cCGCUGCuGCGGa---UGGa--GC-CGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 19277 0.66 0.780404
Target:  5'- uGGCGcGCGGgGCCcACCggggccagCGGCGCgGg -3'
miRNA:   3'- -CCGC-UGCUgCGGaUGGa-------GCCGUGgCa -5'
29634 5' -59.5 NC_006151.1 + 19444 0.69 0.586796
Target:  5'- gGGCGGCucGCGCUggaGCCgCGGCACCu- -3'
miRNA:   3'- -CCGCUGc-UGCGGa--UGGaGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 20121 0.67 0.743568
Target:  5'- cGGCGACGGgGCUggggGgCg-GGCGCCGc -3'
miRNA:   3'- -CCGCUGCUgCGGa---UgGagCCGUGGCa -5'
29634 5' -59.5 NC_006151.1 + 20627 0.69 0.586796
Target:  5'- uGGUGGgGGCGCCc-CCUgggCGGCACCa- -3'
miRNA:   3'- -CCGCUgCUGCGGauGGA---GCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 21011 0.67 0.714949
Target:  5'- cGGCGACGugcACGCUgACgC-CGGCGCCc- -3'
miRNA:   3'- -CCGCUGC---UGCGGaUG-GaGCCGUGGca -5'
29634 5' -59.5 NC_006151.1 + 21411 0.67 0.743568
Target:  5'- gGGCGguGCGGCGUCUcggGCCUCGggggucGCGgCGUg -3'
miRNA:   3'- -CCGC--UGCUGCGGA---UGGAGC------CGUgGCA- -5'
29634 5' -59.5 NC_006151.1 + 21546 0.69 0.596663
Target:  5'- cGGgGcCGGgGCCUggGCCUCGGCgagcccGCCGa -3'
miRNA:   3'- -CCgCuGCUgCGGA--UGGAGCCG------UGGCa -5'
29634 5' -59.5 NC_006151.1 + 21610 0.67 0.743568
Target:  5'- uGGCGGCGGCGUagGCCcgCGGgAgCGUc -3'
miRNA:   3'- -CCGCUGCUGCGgaUGGa-GCCgUgGCA- -5'
29634 5' -59.5 NC_006151.1 + 22939 0.66 0.789321
Target:  5'- cGGUGAUGcCGCUggguCCUCGGUcguCCGc -3'
miRNA:   3'- -CCGCUGCuGCGGau--GGAGCCGu--GGCa -5'
29634 5' -59.5 NC_006151.1 + 24959 0.66 0.789321
Target:  5'- cGUGACGAUGCgcGCCgCGGCcuGCCGc -3'
miRNA:   3'- cCGCUGCUGCGgaUGGaGCCG--UGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.