miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 34075 0.68 0.296864
Target:  5'- -cGCCCCCGGGGUCCCggccCGAGGu---- -3'
miRNA:   3'- uaCGGGGGCUCCGGGG----GCUCCcgcuc -5'
29635 3' -67.6 NC_006151.1 + 115931 0.68 0.296864
Target:  5'- -cGUCCUCGcgcAGGCCCgCCGGGcGcGCGAGc -3'
miRNA:   3'- uaCGGGGGC---UCCGGG-GGCUC-C-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 113091 0.68 0.296864
Target:  5'- -cGUCgCCGccGCCaCCGGGGGCGGGg -3'
miRNA:   3'- uaCGGgGGCucCGGgGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 30807 0.68 0.296864
Target:  5'- -gGCCCCgGGGGCa--CGcGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGgggGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 127519 0.68 0.296219
Target:  5'- cAUGCUCCCGuggcgcgucagcgGGGCCCa-GGGGGCGu- -3'
miRNA:   3'- -UACGGGGGC-------------UCCGGGggCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 47209 0.68 0.296219
Target:  5'- -gGCUCUCGGGGCUCUCGGgucggcuGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCGGGGGCU-------CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 51569 0.68 0.290463
Target:  5'- uUGgUCCCucGGCCCCCcucGGGCGGGu -3'
miRNA:   3'- uACgGGGGcuCCGGGGGcu-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 130642 0.68 0.284171
Target:  5'- -cGCCgCCGAGGCCgCCUGcGGcGUGAa -3'
miRNA:   3'- uaCGGgGGCUCCGG-GGGCuCC-CGCUc -5'
29635 3' -67.6 NC_006151.1 + 86449 0.68 0.284171
Target:  5'- -cGCCCggCGAGGCCCCCGA---CGAGa -3'
miRNA:   3'- uaCGGGg-GCUCCGGGGGCUcccGCUC- -5'
29635 3' -67.6 NC_006151.1 + 119693 0.68 0.284171
Target:  5'- -cGCCCCaacgacagCGA-GCCCCCGAaGGCGAu -3'
miRNA:   3'- uaCGGGG--------GCUcCGGGGGCUcCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 58081 0.68 0.284171
Target:  5'- -cGCCCUCGcgggcgagcucGGGCCCCaggaaggcgaaGAcGGGCGGGg -3'
miRNA:   3'- uaCGGGGGC-----------UCCGGGGg----------CU-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 21035 0.69 0.227095
Target:  5'- -cGCCCCUGAagaggacGCCCCCGAcgcgcggggucaGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUc------CGGGGGCU------------CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 8314 0.69 0.232336
Target:  5'- -cG-CCCCGA-GCCCCCGGGGcgcGCGGGc -3'
miRNA:   3'- uaCgGGGGCUcCGGGGGCUCC---CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 3674 0.69 0.237677
Target:  5'- -cGUCCCCGGGGCggcgggCCCCGGGcGcGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCG------GGGGCUC-C-CGCUc -5'
29635 3' -67.6 NC_006151.1 + 33947 0.69 0.243122
Target:  5'- -cGCCCCgGGGGCUC---GGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGGGggcUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 116839 0.69 0.248669
Target:  5'- -gGUCCUCGGGGUUCUCGGcGGCGGGg -3'
miRNA:   3'- uaCGGGGGCUCCGGGGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 36391 0.69 0.248669
Target:  5'- -gGCCCCCGGcGGCCCC---GGGCGc- -3'
miRNA:   3'- uaCGGGGGCU-CCGGGGgcuCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 107374 0.69 0.248669
Target:  5'- --aUCCCCGGGcugcCCCCCGAGuuGGCGGGg -3'
miRNA:   3'- uacGGGGGCUCc---GGGGGCUC--CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 28317 0.69 0.254321
Target:  5'- -cGUCCCCGGGGCgcccgcCCCCGGGGuuCGAu -3'
miRNA:   3'- uaCGGGGGCUCCG------GGGGCUCCc-GCUc -5'
29635 3' -67.6 NC_006151.1 + 141606 0.69 0.254321
Target:  5'- -cGCCCggCGAGGCUgCCGGgaucGGGCGGGu -3'
miRNA:   3'- uaCGGGg-GCUCCGGgGGCU----CCCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.