miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 13991 0.67 0.344731
Target:  5'- -cGUCCCCGGGGCCCaCGu--GUGAGg -3'
miRNA:   3'- uaCGGGGGCUCCGGGgGCuccCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 122428 0.67 0.337565
Target:  5'- -cGCCgCCGAGGCCCggGAGGcG-GAGg -3'
miRNA:   3'- uaCGGgGGCUCCGGGggCUCC-CgCUC- -5'
29635 3' -67.6 NC_006151.1 + 89643 0.67 0.337565
Target:  5'- -cGCCCuuGAcGGCCaCCGAGaGGUGGc -3'
miRNA:   3'- uaCGGGggCU-CCGGgGGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 87203 0.67 0.337565
Target:  5'- cUGCCgCCCGGGGCCgUCGuGGGaCa-- -3'
miRNA:   3'- uACGG-GGGCUCCGGgGGCuCCC-Gcuc -5'
29635 3' -67.6 NC_006151.1 + 650 0.67 0.337565
Target:  5'- -gGCUUCCGGGGCgCggCCG-GGGCGGGc -3'
miRNA:   3'- uaCGGGGGCUCCGgG--GGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 76223 0.67 0.333318
Target:  5'- cGUGCCgUCGAGGUUcucgcccgagaugagCCCGAGGGCc-- -3'
miRNA:   3'- -UACGGgGGCUCCGG---------------GGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 57266 0.67 0.330508
Target:  5'- -gGCCCUCGAcGGCCUCgCGcagcAGGGCGu- -3'
miRNA:   3'- uaCGGGGGCU-CCGGGG-GC----UCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 86449 0.68 0.284171
Target:  5'- -cGCCCggCGAGGCCCCCGA---CGAGa -3'
miRNA:   3'- uaCGGGg-GCUCCGGGGGCUcccGCUC- -5'
29635 3' -67.6 NC_006151.1 + 119693 0.68 0.284171
Target:  5'- -cGCCCCaacgacagCGA-GCCCCCGAaGGCGAu -3'
miRNA:   3'- uaCGGGG--------GCUcCGGGGGCUcCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 58081 0.68 0.284171
Target:  5'- -cGCCCUCGcgggcgagcucGGGCCCCaggaaggcgaaGAcGGGCGGGg -3'
miRNA:   3'- uaCGGGGGC-----------UCCGGGGg----------CU-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 18411 0.68 0.284171
Target:  5'- cUGUCCCCGccgggggaggaGGGCCgCCGGcGGGCGu- -3'
miRNA:   3'- uACGGGGGC-----------UCCGGgGGCU-CCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 127901 0.68 0.284171
Target:  5'- -cGUCCgagcuCgGGGGCCCCuCGGGGaGCGGGg -3'
miRNA:   3'- uaCGGG-----GgCUCCGGGG-GCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 130642 0.68 0.284171
Target:  5'- -cGCCgCCGAGGCCgCCUGcGGcGUGAa -3'
miRNA:   3'- uaCGGgGGCUCCGG-GGGCuCC-CGCUc -5'
29635 3' -67.6 NC_006151.1 + 51569 0.68 0.290463
Target:  5'- uUGgUCCCucGGCCCCCcucGGGCGGGu -3'
miRNA:   3'- uACgGGGGcuCCGGGGGcu-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 47209 0.68 0.296219
Target:  5'- -gGCUCUCGGGGCUCUCGGgucggcuGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCGGGGGCU-------CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 127519 0.68 0.296219
Target:  5'- cAUGCUCCCGuggcgcgucagcgGGGCCCa-GGGGGCGu- -3'
miRNA:   3'- -UACGGGGGC-------------UCCGGGggCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 30807 0.68 0.296864
Target:  5'- -gGCCCCgGGGGCa--CGcGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGgggGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 113091 0.68 0.296864
Target:  5'- -cGUCgCCGccGCCaCCGGGGGCGGGg -3'
miRNA:   3'- uaCGGgGGCucCGGgGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 115931 0.68 0.296864
Target:  5'- -cGUCCUCGcgcAGGCCCgCCGGGcGcGCGAGc -3'
miRNA:   3'- uaCGGGGGC---UCCGGG-GGCUC-C-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 81595 0.68 0.284171
Target:  5'- -cGUCgCCGGGGCCgCCGgcgcgcagcagcAGGGCGAc -3'
miRNA:   3'- uaCGGgGGCUCCGGgGGC------------UCCCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.