miRNA display CGI


Results 41 - 60 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 34075 0.68 0.296864
Target:  5'- -cGCCCCCGGGGUCCCggccCGAGGu---- -3'
miRNA:   3'- uaCGGGGGCUCCGGGG----GCUCCcgcuc -5'
29635 3' -67.6 NC_006151.1 + 34971 0.73 0.128725
Target:  5'- uUGCaCCgUGAGGCCCCauuggcCGAGGGCGGc -3'
miRNA:   3'- uACG-GGgGCUCCGGGG------GCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 36391 0.69 0.248669
Target:  5'- -gGCCCCCGGcGGCCCC---GGGCGc- -3'
miRNA:   3'- uaCGGGGGCU-CCGGGGgcuCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 37008 0.67 0.316722
Target:  5'- -cGCCCCCcGGGCCCCCGccgccgccgcGcGGCGc- -3'
miRNA:   3'- uaCGGGGGcUCCGGGGGCu---------C-CCGCuc -5'
29635 3' -67.6 NC_006151.1 + 38121 0.66 0.366879
Target:  5'- --aUCCCCGGGGCCggcccggCCGAGcGGCGGc -3'
miRNA:   3'- uacGGGGGCUCCGGg------GGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 38579 0.72 0.138437
Target:  5'- -cGCgCCCGGGGCCcgccgcCCCGGGgacGGCGAGg -3'
miRNA:   3'- uaCGgGGGCUCCGG------GGGCUC---CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 39095 0.73 0.12171
Target:  5'- cUGCCCCaCGAGgagcucugcgccgaGCCCgCCGAGGGCGc- -3'
miRNA:   3'- uACGGGG-GCUC--------------CGGG-GGCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 40013 0.67 0.312672
Target:  5'- uUGCCCCCuucGAGaccagcguccgcgccGCCgCCGGGGGCGc- -3'
miRNA:   3'- uACGGGGG---CUC---------------CGGgGGCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 41129 0.71 0.171315
Target:  5'- gAUGgUCCCGAGGgUCCCGGuggucccGGGCGGGa -3'
miRNA:   3'- -UACgGGGGCUCCgGGGGCU-------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 41538 0.67 0.344731
Target:  5'- -aGCCCCCGcccgcGGaCCCCCGgugcgacggaaGGGGCa-- -3'
miRNA:   3'- uaCGGGGGCu----CC-GGGGGC-----------UCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 42240 0.78 0.05117
Target:  5'- -cGCCCCCuuuuuucgcGGCCCCCGGGGaGCGGGg -3'
miRNA:   3'- uaCGGGGGcu-------CCGGGGGCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 44098 0.72 0.150252
Target:  5'- --aCCCCCGAGcGCccauccccaucaaccCCCCGGGGGCGGc -3'
miRNA:   3'- uacGGGGGCUC-CG---------------GGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 44167 0.67 0.329809
Target:  5'- cGUGCCCCUGGGagcaccgcgggucGCCgUCCGGGcGGCGGc -3'
miRNA:   3'- -UACGGGGGCUC-------------CGG-GGGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 45578 0.71 0.184318
Target:  5'- -cGUCCCgGGacGGCCCgaGGGGGCGGGg -3'
miRNA:   3'- uaCGGGGgCU--CCGGGggCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 46570 0.66 0.349812
Target:  5'- -cGCuCCCCGcgcaGGGCCCgacgggcggccgugCUGAGGcGCGAGc -3'
miRNA:   3'- uaCG-GGGGC----UCCGGG--------------GGCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 46628 0.66 0.369905
Target:  5'- gGUGCCUgCGAcgcGGCCggacgggcggacaggCCC-AGGGCGAGa -3'
miRNA:   3'- -UACGGGgGCU---CCGG---------------GGGcUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 46717 0.68 0.260078
Target:  5'- gGUGCCUCgGGGGCCggggccggCCCGGGgucGGCGAa -3'
miRNA:   3'- -UACGGGGgCUCCGG--------GGGCUC---CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 46829 0.82 0.026318
Target:  5'- cUGCCCCCGAGaccgccGCCCCCcGGGGCGGGc -3'
miRNA:   3'- uACGGGGGCUC------CGGGGGcUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 47209 0.68 0.296219
Target:  5'- -gGCUCUCGGGGCUCUCGGgucggcuGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCGGGGGCU-------CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 50023 0.66 0.374476
Target:  5'- -gGCCCgCGcGGcGCCCCCGGGcGCGGc -3'
miRNA:   3'- uaCGGGgGC-UC-CGGGGGCUCcCGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.