miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 20297 0.66 0.389986
Target:  5'- -gGgCCCCGGGcGCCCgCCGuggcguuggcGGcGGCGAGc -3'
miRNA:   3'- uaCgGGGGCUC-CGGG-GGC----------UC-CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 21035 0.69 0.227095
Target:  5'- -cGCCCCUGAagaggacGCCCCCGAcgcgcggggucaGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUc------CGGGGGCU------------CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 21571 0.66 0.352006
Target:  5'- -aGCCCgCCGAGGgCCgCGcGGGGuCGAu -3'
miRNA:   3'- uaCGGG-GGCUCCgGGgGC-UCCC-GCUc -5'
29635 3' -67.6 NC_006151.1 + 22200 0.71 0.188695
Target:  5'- -cGUCCgCGGGGCCgaCGaAGGGCGAGg -3'
miRNA:   3'- uaCGGGgGCUCCGGggGC-UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 22626 0.68 0.284171
Target:  5'- gAUGCCCacgaCGAccaGGCCggCGAGGGCGAc -3'
miRNA:   3'- -UACGGGg---GCU---CCGGggGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 23245 0.76 0.080545
Target:  5'- -cGCCCUCGGGGgCCUCGGGGGCa-- -3'
miRNA:   3'- uaCGGGGGCUCCgGGGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 23992 0.75 0.091231
Target:  5'- gGUGCggaCCaCGAGGagCCCGAGGGCGAGg -3'
miRNA:   3'- -UACGg--GG-GCUCCggGGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 24189 0.72 0.148816
Target:  5'- -aGCCCCCGucucGGGCagCCCGA-GGCGAGc -3'
miRNA:   3'- uaCGGGGGC----UCCGg-GGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 24275 0.66 0.382179
Target:  5'- -cGCUCCgGAGGCgCgUGucGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGgGgGCu-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 24303 0.7 0.202378
Target:  5'- --cUCCUCGGGGUgcaCCCCGAGGGCGcGGa -3'
miRNA:   3'- uacGGGGGCUCCG---GGGGCUCCCGC-UC- -5'
29635 3' -67.6 NC_006151.1 + 27164 0.67 0.344731
Target:  5'- -cGgCCCCGAGGCgCCgCGugucGGGGCGccAGg -3'
miRNA:   3'- uaCgGGGGCUCCG-GGgGC----UCCCGC--UC- -5'
29635 3' -67.6 NC_006151.1 + 27337 0.66 0.373711
Target:  5'- cUGCuCCCCGggaccggggucguGGGCCggggCCCGGgcgggucgacGGGCGAGa -3'
miRNA:   3'- uACG-GGGGC-------------UCCGG----GGGCU----------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 28250 0.66 0.382179
Target:  5'- -gGCCCauuggCCGGGGCCucacacgugggcCCCGGGGacGCGGGc -3'
miRNA:   3'- uaCGGG-----GGCUCCGG------------GGGCUCC--CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 28317 0.69 0.254321
Target:  5'- -cGUCCCCGGGGCgcccgcCCCCGGGGuuCGAu -3'
miRNA:   3'- uaCGGGGGCUCCG------GGGGCUCCc-GCUc -5'
29635 3' -67.6 NC_006151.1 + 29246 0.73 0.128725
Target:  5'- -cGCgCCCCGAGGgacagggaauCCCCCGGgacGGGUGAGu -3'
miRNA:   3'- uaCG-GGGGCUCC----------GGGGGCU---CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 30807 0.68 0.296864
Target:  5'- -gGCCCCgGGGGCa--CGcGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGgggGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 31225 0.72 0.141479
Target:  5'- -gGCCCCCGGccGGCCggCCCGGcgagcgagcgggcGGGCGAGc -3'
miRNA:   3'- uaCGGGGGCU--CCGG--GGGCU-------------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 33210 0.79 0.046222
Target:  5'- -cGCCCCCGgagcacgcgGGGCgCCCCGGcGGGCGGGa -3'
miRNA:   3'- uaCGGGGGC---------UCCG-GGGGCU-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 33869 0.71 0.188695
Target:  5'- uUGaCCCCCcccaucccGGaccCCCCCGGGGGCGGGg -3'
miRNA:   3'- uAC-GGGGGcu------CC---GGGGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 33947 0.69 0.243122
Target:  5'- -cGCCCCgGGGGCUC---GGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGGGggcUCCCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.