miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 119693 0.68 0.284171
Target:  5'- -cGCCCCaacgacagCGA-GCCCCCGAaGGCGAu -3'
miRNA:   3'- uaCGGGG--------GCUcCGGGGGCUcCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 117801 0.67 0.326326
Target:  5'- -cGCCCggcggggCGGGGCCCCaCGcuuuaagacccggccGGGGCGGGc -3'
miRNA:   3'- uaCGGGg------GCUCCGGGG-GC---------------UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 116839 0.69 0.248669
Target:  5'- -gGUCCUCGGGGUUCUCGGcGGCGGGg -3'
miRNA:   3'- uaCGGGGGCUCCGGGGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 115931 0.68 0.296864
Target:  5'- -cGUCCUCGcgcAGGCCCgCCGGGcGcGCGAGc -3'
miRNA:   3'- uaCGGGGGC---UCCGGG-GGCUC-C-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 114921 0.67 0.303374
Target:  5'- -cGgCCCCGGcgucgcgcucGGCCUCCG-GGGUGGGc -3'
miRNA:   3'- uaCgGGGGCU----------CCGGGGGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 114691 0.66 0.389986
Target:  5'- cGUGCUCgaaGGGcgcGUCCCCGGGGGCGGu -3'
miRNA:   3'- -UACGGGgg-CUC---CGGGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 113091 0.68 0.296864
Target:  5'- -cGUCgCCGccGCCaCCGGGGGCGGGg -3'
miRNA:   3'- uaCGGgGGCucCGGgGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 111395 0.7 0.202378
Target:  5'- -cGCCgCCGGcaCCCCCGccGGGGCGGGa -3'
miRNA:   3'- uaCGGgGGCUccGGGGGC--UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 109081 0.75 0.088991
Target:  5'- -cGCCCCCGGagucGGCCCCgGAGGcccaGUGAGg -3'
miRNA:   3'- uaCGGGGGCU----CCGGGGgCUCC----CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 108656 0.66 0.366879
Target:  5'- -cGCCCgCgGAGGUCCCCccucagcagccgGAGcGGCGGc -3'
miRNA:   3'- uaCGGG-GgCUCCGGGGG------------CUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 107873 0.68 0.270108
Target:  5'- -gGCCCCCccgGAGGCCCCCcAGGcccagccgcccgccGCGGc -3'
miRNA:   3'- uaCGGGGG---CUCCGGGGGcUCC--------------CGCUc -5'
29635 3' -67.6 NC_006151.1 + 107374 0.69 0.248669
Target:  5'- --aUCCCCGGGcugcCCCCCGAGuuGGCGGGg -3'
miRNA:   3'- uacGGGGGCUCc---GGGGGCUC--CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 105308 0.67 0.316722
Target:  5'- -cGCCUCCGAggacgaGGCCCCCcuGGcCGAGg -3'
miRNA:   3'- uaCGGGGGCU------CCGGGGGcuCCcGCUC- -5'
29635 3' -67.6 NC_006151.1 + 105245 0.66 0.374476
Target:  5'- -gGCCgCCGAGGUCgCCu-GGGaCGAGg -3'
miRNA:   3'- uaCGGgGGCUCCGGgGGcuCCC-GCUC- -5'
29635 3' -67.6 NC_006151.1 + 101912 0.68 0.265941
Target:  5'- cAUGCCCaagCGGcgccGGCCCCCGuggccGGCGAGc -3'
miRNA:   3'- -UACGGGg--GCU----CCGGGGGCuc---CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 100074 0.66 0.374476
Target:  5'- -gGCCgCCGAGGUgCUCGAGGcGCcGGc -3'
miRNA:   3'- uaCGGgGGCUCCGgGGGCUCC-CGcUC- -5'
29635 3' -67.6 NC_006151.1 + 97926 0.75 0.095872
Target:  5'- -cGCCgCCGAGGCCgCgcccgcccucguCGAGGGCGAGc -3'
miRNA:   3'- uaCGGgGGCUCCGGgG------------GCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 90621 0.68 0.260078
Target:  5'- --uCCCCCGAGGCggCCCGcGGGCGc- -3'
miRNA:   3'- uacGGGGGCUCCGg-GGGCuCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 89643 0.67 0.337565
Target:  5'- -cGCCCuuGAcGGCCaCCGAGaGGUGGc -3'
miRNA:   3'- uaCGGGggCU-CCGGgGGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 89226 0.7 0.207127
Target:  5'- uUGCCgCCGccGCCCCCGuuGGGCGu- -3'
miRNA:   3'- uACGGgGGCucCGGGGGCu-CCCGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.