miRNA display CGI


Results 1 - 20 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 142722 0.66 0.372186
Target:  5'- --uCCCCCG-GGCCCCCacaacucucuggccGGGGGCc-- -3'
miRNA:   3'- uacGGGGGCuCCGGGGG--------------CUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 141606 0.69 0.254321
Target:  5'- -cGCCCggCGAGGCUgCCGGgaucGGGCGGGu -3'
miRNA:   3'- uaCGGGg-GCUCCGGgGGCU----CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 135717 0.67 0.323561
Target:  5'- cUGCUCaCGGGcaggaGCCCUCGGGGGCGGu -3'
miRNA:   3'- uACGGGgGCUC-----CGGGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 134976 0.7 0.207127
Target:  5'- -aGCCUCCG-GGCCUUCucGGGCGGGc -3'
miRNA:   3'- uaCGGGGGCuCCGGGGGcuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 134411 0.67 0.316722
Target:  5'- cUGCCCgCgCGAGcuggugcuGcCCCCCGGGGGCGc- -3'
miRNA:   3'- uACGGG-G-GCUC--------C-GGGGGCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 133685 0.72 0.14528
Target:  5'- -cGCCCCCGAGGCggUCUCGucGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCG--GGGGCucCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 133460 0.73 0.135127
Target:  5'- -gGCCCCgguCGAGGCCCgCGAGGcggccGCGGGc -3'
miRNA:   3'- uaCGGGG---GCUCCGGGgGCUCC-----CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 133291 0.73 0.116756
Target:  5'- -gGCCCacguCGAGGUucuCCCCGGGGGCGGc -3'
miRNA:   3'- uaCGGGg---GCUCCG---GGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 131934 0.67 0.323561
Target:  5'- gGUGCUgCCGuagcuGGCCacgggCGAGGGCGGGc -3'
miRNA:   3'- -UACGGgGGCu----CCGGgg---GCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 130911 0.72 0.15243
Target:  5'- -cGCCgUCGucgguggccGGGCCCgCGGGGGCGGGg -3'
miRNA:   3'- uaCGGgGGC---------UCCGGGgGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 130706 0.66 0.359388
Target:  5'- -gGCCCgaCGGGGCggCCCGGGGGCc-- -3'
miRNA:   3'- uaCGGGg-GCUCCGg-GGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 130642 0.68 0.284171
Target:  5'- -cGCCgCCGAGGCCgCCUGcGGcGUGAa -3'
miRNA:   3'- uaCGGgGGCUCCGG-GGGCuCC-CGCUc -5'
29635 3' -67.6 NC_006151.1 + 127901 0.68 0.284171
Target:  5'- -cGUCCgagcuCgGGGGCCCCuCGGGGaGCGGGg -3'
miRNA:   3'- uaCGGG-----GgCUCCGGGG-GCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 127722 0.7 0.202378
Target:  5'- -aGgCCCCGGcGUCCCCGucgcGGGCGGGa -3'
miRNA:   3'- uaCgGGGGCUcCGGGGGCu---CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 127519 0.68 0.296219
Target:  5'- cAUGCUCCCGuggcgcgucagcgGGGCCCa-GGGGGCGu- -3'
miRNA:   3'- -UACGGGGGC-------------UCCGGGggCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 125217 0.71 0.163756
Target:  5'- -gGCCCCCGcGGCCgCCCGucGGGCc-- -3'
miRNA:   3'- uaCGGGGGCuCCGG-GGGCu-CCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 124025 0.83 0.021977
Target:  5'- -gGCCCCUcgGAGGCCCCCGAcGGCGAGu -3'
miRNA:   3'- uaCGGGGG--CUCCGGGGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 123743 0.68 0.268316
Target:  5'- cAUGCCCgCUGuGGCggucuuuggcgcgggCCCCGGGGGCa-- -3'
miRNA:   3'- -UACGGG-GGCuCCG---------------GGGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 122904 0.77 0.064256
Target:  5'- -cGCCCUCGAGcGCCuCCuCGAGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUC-CGG-GG-GCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 122428 0.67 0.337565
Target:  5'- -cGCCgCCGAGGCCCggGAGGcG-GAGg -3'
miRNA:   3'- uaCGGgGGCUCCGGGggCUCC-CgCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.