miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 52376 0.88 0.009603
Target:  5'- -cGCCCCCGGGGCCCgCGGGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCGGGgGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 124025 0.83 0.021977
Target:  5'- -gGCCCCUcgGAGGCCCCCGAcGGCGAGu -3'
miRNA:   3'- uaCGGGGG--CUCCGGGGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 46829 0.82 0.026318
Target:  5'- cUGCCCCCGAGaccgccGCCCCCcGGGGCGGGc -3'
miRNA:   3'- uACGGGGGCUC------CGGGGGcUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 33210 0.79 0.046222
Target:  5'- -cGCCCCCGgagcacgcgGGGCgCCCCGGcGGGCGGGa -3'
miRNA:   3'- uaCGGGGGC---------UCCG-GGGGCU-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 2188 0.79 0.048635
Target:  5'- -gGCgCCCGAGGCCCCCGcGGGCcGGu -3'
miRNA:   3'- uaCGgGGGCUCCGGGGGCuCCCGcUC- -5'
29635 3' -67.6 NC_006151.1 + 42240 0.78 0.05117
Target:  5'- -cGCCCCCuuuuuucgcGGCCCCCGGGGaGCGGGg -3'
miRNA:   3'- uaCGGGGGcu-------CCGGGGGCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 122904 0.77 0.064256
Target:  5'- -cGCCCUCGAGcGCCuCCuCGAGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUC-CGG-GG-GCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 23245 0.76 0.080545
Target:  5'- -cGCCCUCGGGGgCCUCGGGGGCa-- -3'
miRNA:   3'- uaCGGGGGCUCCgGGGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 5868 0.75 0.088991
Target:  5'- -aGCgCCCGGGGCCgCCGGGGGCc-- -3'
miRNA:   3'- uaCGgGGGCUCCGGgGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 82699 0.75 0.088991
Target:  5'- -gGCCCCCgcgagggccagGAGGCCCgCGAGGGUcagGAGg -3'
miRNA:   3'- uaCGGGGG-----------CUCCGGGgGCUCCCG---CUC- -5'
29635 3' -67.6 NC_006151.1 + 109081 0.75 0.088991
Target:  5'- -cGCCCCCGGagucGGCCCCgGAGGcccaGUGAGg -3'
miRNA:   3'- uaCGGGGGCU----CCGGGGgCUCC----CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 84191 0.75 0.088991
Target:  5'- -cGCCgCCGu-GCCCCCGGGcGGCGAGg -3'
miRNA:   3'- uaCGGgGGCucCGGGGGCUC-CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 23992 0.75 0.091231
Target:  5'- gGUGCggaCCaCGAGGagCCCGAGGGCGAGg -3'
miRNA:   3'- -UACGg--GG-GCUCCggGGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 97926 0.75 0.095872
Target:  5'- -cGCCgCCGAGGCCgCgcccgcccucguCGAGGGCGAGc -3'
miRNA:   3'- uaCGGgGGCUCCGGgG------------GCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 2394 0.74 0.100735
Target:  5'- -gGCCCUCGGGGCCgCgGAGcucGGCGAGg -3'
miRNA:   3'- uaCGGGGGCUCCGGgGgCUC---CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 81356 0.74 0.111168
Target:  5'- -cGCgCCCGGGGCCCCgGcGGGCGc- -3'
miRNA:   3'- uaCGgGGGCUCCGGGGgCuCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 133291 0.73 0.116756
Target:  5'- -gGCCCacguCGAGGUucuCCCCGGGGGCGGc -3'
miRNA:   3'- uaCGGGg---GCUCCG---GGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 39095 0.73 0.12171
Target:  5'- cUGCCCCaCGAGgagcucugcgccgaGCCCgCCGAGGGCGc- -3'
miRNA:   3'- uACGGGG-GCUC--------------CGGG-GGCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 18748 0.73 0.122605
Target:  5'- -cGCCgCCGGGGCCCCaCGGGGuGCccGGGg -3'
miRNA:   3'- uaCGGgGGCUCCGGGG-GCUCC-CG--CUC- -5'
29635 3' -67.6 NC_006151.1 + 29246 0.73 0.128725
Target:  5'- -cGCgCCCCGAGGgacagggaauCCCCCGGgacGGGUGAGu -3'
miRNA:   3'- uaCG-GGGGCUCC----------GGGGGCU---CCCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.