miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 29246 0.73 0.128725
Target:  5'- -cGCgCCCCGAGGgacagggaauCCCCCGGgacGGGUGAGu -3'
miRNA:   3'- uaCG-GGGGCUCC----------GGGGGCU---CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 9037 0.73 0.13189
Target:  5'- -cGCCCgCCGGGGCgCCCCGcgugcuccgGGGGCGc- -3'
miRNA:   3'- uaCGGG-GGCUCCG-GGGGC---------UCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 133460 0.73 0.135127
Target:  5'- -gGCCCCgguCGAGGCCCgCGAGGcggccGCGGGc -3'
miRNA:   3'- uaCGGGG---GCUCCGGGgGCUCC-----CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 38579 0.72 0.138437
Target:  5'- -cGCgCCCGGGGCCcgccgcCCCGGGgacGGCGAGg -3'
miRNA:   3'- uaCGgGGGCUCCGG------GGGCUC---CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 31225 0.72 0.141479
Target:  5'- -gGCCCCCGGccGGCCggCCCGGcgagcgagcgggcGGGCGAGc -3'
miRNA:   3'- uaCGGGGGCU--CCGG--GGGCU-------------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 133685 0.72 0.14528
Target:  5'- -cGCCCCCGAGGCggUCUCGucGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCG--GGGGCucCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 24189 0.72 0.148816
Target:  5'- -aGCCCCCGucucGGGCagCCCGA-GGCGAGc -3'
miRNA:   3'- uaCGGGGGC----UCCGg-GGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 44098 0.72 0.150252
Target:  5'- --aCCCCCGAGcGCccauccccaucaaccCCCCGGGGGCGGc -3'
miRNA:   3'- uacGGGGGCUC-CG---------------GGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 130911 0.72 0.15243
Target:  5'- -cGCCgUCGucgguggccGGGCCCgCGGGGGCGGGg -3'
miRNA:   3'- uaCGGgGGC---------UCCGGGgGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 125217 0.71 0.163756
Target:  5'- -gGCCCCCGcGGCCgCCCGucGGGCc-- -3'
miRNA:   3'- uaCGGGGGCuCCGG-GGGCu-CCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 41129 0.71 0.171315
Target:  5'- gAUGgUCCCGAGGgUCCCGGuggucccGGGCGGGa -3'
miRNA:   3'- -UACgGGGGCUCCgGGGGCU-------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 45578 0.71 0.184318
Target:  5'- -cGUCCCgGGacGGCCCgaGGGGGCGGGg -3'
miRNA:   3'- uaCGGGGgCU--CCGGGggCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 10 0.71 0.188253
Target:  5'- -cGCuCCCCGGGGgCCgCGAaaaaaggGGGCGGGg -3'
miRNA:   3'- uaCG-GGGGCUCCgGGgGCU-------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 33869 0.71 0.188695
Target:  5'- uUGaCCCCCcccaucccGGaccCCCCCGGGGGCGGGg -3'
miRNA:   3'- uAC-GGGGGcu------CC---GGGGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 18557 0.71 0.188695
Target:  5'- -cGgCCgCGAGGCCgCCCGGcGGCGGGa -3'
miRNA:   3'- uaCgGGgGCUCCGG-GGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 22200 0.71 0.188695
Target:  5'- -cGUCCgCGGGGCCgaCGaAGGGCGAGg -3'
miRNA:   3'- uaCGGGgGCUCCGGggGC-UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 65110 0.7 0.193163
Target:  5'- cAUGCCCCagGAGGaCgCCCGucGGCGGGc -3'
miRNA:   3'- -UACGGGGg-CUCC-GgGGGCucCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 8373 0.7 0.197724
Target:  5'- -gGCCCCC---GCCCCCGGGGGggucCGGGa -3'
miRNA:   3'- uaCGGGGGcucCGGGGGCUCCC----GCUC- -5'
29635 3' -67.6 NC_006151.1 + 24303 0.7 0.202378
Target:  5'- --cUCCUCGGGGUgcaCCCCGAGGGCGcGGa -3'
miRNA:   3'- uacGGGGGCUCCG---GGGGCUCCCGC-UC- -5'
29635 3' -67.6 NC_006151.1 + 111395 0.7 0.202378
Target:  5'- -cGCCgCCGGcaCCCCCGccGGGGCGGGa -3'
miRNA:   3'- uaCGGgGGCUccGGGGGC--UCCCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.