miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 130706 0.66 0.359388
Target:  5'- -gGCCCgaCGGGGCggCCCGGGGGCc-- -3'
miRNA:   3'- uaCGGGg-GCUCCGg-GGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 21571 0.66 0.352006
Target:  5'- -aGCCCgCCGAGGgCCgCGcGGGGuCGAu -3'
miRNA:   3'- uaCGGG-GGCUCCgGGgGC-UCCC-GCUc -5'
29635 3' -67.6 NC_006151.1 + 46570 0.66 0.349812
Target:  5'- -cGCuCCCCGcgcaGGGCCCgacgggcggccgugCUGAGGcGCGAGc -3'
miRNA:   3'- uaCG-GGGGC----UCCGGG--------------GGCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 17799 0.67 0.345454
Target:  5'- -cGCCCCCccGGaCCCCCccuccugggcgcggcGGGGCGGGc -3'
miRNA:   3'- uaCGGGGGcuCC-GGGGGc--------------UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 66908 0.67 0.344731
Target:  5'- -cGCCgCCGAGGagggCCacgauggaggCGGGGGCGAGg -3'
miRNA:   3'- uaCGGgGGCUCCg---GGg---------GCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 41538 0.67 0.344731
Target:  5'- -aGCCCCCGcccgcGGaCCCCCGgugcgacggaaGGGGCa-- -3'
miRNA:   3'- uaCGGGGGCu----CC-GGGGGC-----------UCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 27164 0.67 0.344731
Target:  5'- -cGgCCCCGAGGCgCCgCGugucGGGGCGccAGg -3'
miRNA:   3'- uaCgGGGGCUCCG-GGgGC----UCCCGC--UC- -5'
29635 3' -67.6 NC_006151.1 + 13991 0.67 0.344731
Target:  5'- -cGUCCCCGGGGCCCaCGu--GUGAGg -3'
miRNA:   3'- uaCGGGGGCUCCGGGgGCuccCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 650 0.67 0.337565
Target:  5'- -gGCUUCCGGGGCgCggCCG-GGGCGGGc -3'
miRNA:   3'- uaCGGGGGCUCCGgG--GGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 87203 0.67 0.337565
Target:  5'- cUGCCgCCCGGGGCCgUCGuGGGaCa-- -3'
miRNA:   3'- uACGG-GGGCUCCGGgGGCuCCC-Gcuc -5'
29635 3' -67.6 NC_006151.1 + 89643 0.67 0.337565
Target:  5'- -cGCCCuuGAcGGCCaCCGAGaGGUGGc -3'
miRNA:   3'- uaCGGGggCU-CCGGgGGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 122428 0.67 0.337565
Target:  5'- -cGCCgCCGAGGCCCggGAGGcG-GAGg -3'
miRNA:   3'- uaCGGgGGCUCCGGGggCUCC-CgCUC- -5'
29635 3' -67.6 NC_006151.1 + 76223 0.67 0.333318
Target:  5'- cGUGCCgUCGAGGUUcucgcccgagaugagCCCGAGGGCc-- -3'
miRNA:   3'- -UACGGgGGCUCCGG---------------GGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 57266 0.67 0.330508
Target:  5'- -gGCCCUCGAcGGCCUCgCGcagcAGGGCGu- -3'
miRNA:   3'- uaCGGGGGCU-CCGGGG-GC----UCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 44167 0.67 0.329809
Target:  5'- cGUGCCCCUGGGagcaccgcgggucGCCgUCCGGGcGGCGGc -3'
miRNA:   3'- -UACGGGGGCUC-------------CGG-GGGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 117801 0.67 0.326326
Target:  5'- -cGCCCggcggggCGGGGCCCCaCGcuuuaagacccggccGGGGCGGGc -3'
miRNA:   3'- uaCGGGg------GCUCCGGGG-GC---------------UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 131934 0.67 0.323561
Target:  5'- gGUGCUgCCGuagcuGGCCacgggCGAGGGCGGGc -3'
miRNA:   3'- -UACGGgGGCu----CCGGgg---GCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 135717 0.67 0.323561
Target:  5'- cUGCUCaCGGGcaggaGCCCUCGGGGGCGGu -3'
miRNA:   3'- uACGGGgGCUC-----CGGGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 134411 0.67 0.316722
Target:  5'- cUGCCCgCgCGAGcuggugcuGcCCCCCGGGGGCGc- -3'
miRNA:   3'- uACGGG-G-GCUC--------C-GGGGGCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 105308 0.67 0.316722
Target:  5'- -cGCCUCCGAggacgaGGCCCCCcuGGcCGAGg -3'
miRNA:   3'- uaCGGGGGCU------CCGGGGGcuCCcGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.