miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 105308 0.67 0.316722
Target:  5'- -cGCCUCCGAggacgaGGCCCCCcuGGcCGAGg -3'
miRNA:   3'- uaCGGGGGCU------CCGGGGGcuCCcGCUC- -5'
29635 3' -67.6 NC_006151.1 + 19287 0.67 0.316722
Target:  5'- -gGCCCaCCGGGGCCagCGGcgcGGGCGGc -3'
miRNA:   3'- uaCGGG-GGCUCCGGggGCU---CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 40013 0.67 0.312672
Target:  5'- uUGCCCCCuucGAGaccagcguccgcgccGCCgCCGGGGGCGc- -3'
miRNA:   3'- uACGGGGG---CUC---------------CGGgGGCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 14027 0.67 0.309994
Target:  5'- -gGCCCgUCGGcccGGCCCCCucgacGGGGCGAu -3'
miRNA:   3'- uaCGGG-GGCU---CCGGGGGc----UCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 57125 0.67 0.303374
Target:  5'- -cGCgCCCGGcggucGCCCCugcgcacgcggCGGGGGCGAGg -3'
miRNA:   3'- uaCGgGGGCUc----CGGGG-----------GCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 75890 0.67 0.303374
Target:  5'- cAUGCgCgCGAcGGCCaCCGAGGGCGcGg -3'
miRNA:   3'- -UACGgGgGCU-CCGGgGGCUCCCGCuC- -5'
29635 3' -67.6 NC_006151.1 + 114921 0.67 0.303374
Target:  5'- -cGgCCCCGGcgucgcgcucGGCCUCCG-GGGUGGGc -3'
miRNA:   3'- uaCgGGGGCU----------CCGGGGGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 34075 0.68 0.296864
Target:  5'- -cGCCCCCGGGGUCCCggccCGAGGu---- -3'
miRNA:   3'- uaCGGGGGCUCCGGGG----GCUCCcgcuc -5'
29635 3' -67.6 NC_006151.1 + 115931 0.68 0.296864
Target:  5'- -cGUCCUCGcgcAGGCCCgCCGGGcGcGCGAGc -3'
miRNA:   3'- uaCGGGGGC---UCCGGG-GGCUC-C-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 113091 0.68 0.296864
Target:  5'- -cGUCgCCGccGCCaCCGGGGGCGGGg -3'
miRNA:   3'- uaCGGgGGCucCGGgGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 30807 0.68 0.296864
Target:  5'- -gGCCCCgGGGGCa--CGcGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGgggGCuCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 127519 0.68 0.296219
Target:  5'- cAUGCUCCCGuggcgcgucagcgGGGCCCa-GGGGGCGu- -3'
miRNA:   3'- -UACGGGGGC-------------UCCGGGggCUCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 47209 0.68 0.296219
Target:  5'- -gGCUCUCGGGGCUCUCGGgucggcuGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCGGGGGCU-------CCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 51569 0.68 0.290463
Target:  5'- uUGgUCCCucGGCCCCCcucGGGCGGGu -3'
miRNA:   3'- uACgGGGGcuCCGGGGGcu-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 86449 0.68 0.284171
Target:  5'- -cGCCCggCGAGGCCCCCGA---CGAGa -3'
miRNA:   3'- uaCGGGg-GCUCCGGGGGCUcccGCUC- -5'
29635 3' -67.6 NC_006151.1 + 119693 0.68 0.284171
Target:  5'- -cGCCCCaacgacagCGA-GCCCCCGAaGGCGAu -3'
miRNA:   3'- uaCGGGG--------GCUcCGGGGGCUcCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 58081 0.68 0.284171
Target:  5'- -cGCCCUCGcgggcgagcucGGGCCCCaggaaggcgaaGAcGGGCGGGg -3'
miRNA:   3'- uaCGGGGGC-----------UCCGGGGg----------CU-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 18411 0.68 0.284171
Target:  5'- cUGUCCCCGccgggggaggaGGGCCgCCGGcGGGCGu- -3'
miRNA:   3'- uACGGGGGC-----------UCCGGgGGCU-CCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 127901 0.68 0.284171
Target:  5'- -cGUCCgagcuCgGGGGCCCCuCGGGGaGCGGGg -3'
miRNA:   3'- uaCGGG-----GgCUCCGGGG-GCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 81595 0.68 0.284171
Target:  5'- -cGUCgCCGGGGCCgCCGgcgcgcagcagcAGGGCGAc -3'
miRNA:   3'- uaCGGgGGCUCCGGgGGC------------UCCCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.