miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 86449 0.68 0.284171
Target:  5'- -cGCCCggCGAGGCCCCCGA---CGAGa -3'
miRNA:   3'- uaCGGGg-GCUCCGGGGGCUcccGCUC- -5'
29635 3' -67.6 NC_006151.1 + 130642 0.68 0.284171
Target:  5'- -cGCCgCCGAGGCCgCCUGcGGcGUGAa -3'
miRNA:   3'- uaCGGgGGCUCCGG-GGGCuCC-CGCUc -5'
29635 3' -67.6 NC_006151.1 + 11460 0.68 0.276152
Target:  5'- cGUGCCCCCGGGGCcaucggcuggaacaCCCUGAGccuucGCuGAGu -3'
miRNA:   3'- -UACGGGGGCUCCG--------------GGGGCUCc----CG-CUC- -5'
29635 3' -67.6 NC_006151.1 + 59956 0.68 0.27191
Target:  5'- -aGCCCUCGAGcGCCaCCCGcaGGCGGu -3'
miRNA:   3'- uaCGGGGGCUC-CGG-GGGCucCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 17206 0.68 0.27191
Target:  5'- cGUGCCCC--GGGCCCCCGAGuucaGGUa-- -3'
miRNA:   3'- -UACGGGGgcUCCGGGGGCUC----CCGcuc -5'
29635 3' -67.6 NC_006151.1 + 107873 0.68 0.270108
Target:  5'- -gGCCCCCccgGAGGCCCCCcAGGcccagccgcccgccGCGGc -3'
miRNA:   3'- uaCGGGGG---CUCCGGGGGcUCC--------------CGCUc -5'
29635 3' -67.6 NC_006151.1 + 13893 0.68 0.269509
Target:  5'- cGUGCCCCCauuggcgauuuaucGAucgcuuuccgaagGGaucgaaCCCCGGGGGCGGGc -3'
miRNA:   3'- -UACGGGGG--------------CU-------------CCg-----GGGGCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 123743 0.68 0.268316
Target:  5'- cAUGCCCgCUGuGGCggucuuuggcgcgggCCCCGGGGGCa-- -3'
miRNA:   3'- -UACGGG-GGCuCCG---------------GGGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 101912 0.68 0.265941
Target:  5'- cAUGCCCaagCGGcgccGGCCCCCGuggccGGCGAGc -3'
miRNA:   3'- -UACGGGg--GCU----CCGGGGGCuc---CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 46717 0.68 0.260078
Target:  5'- gGUGCCUCgGGGGCCggggccggCCCGGGgucGGCGAa -3'
miRNA:   3'- -UACGGGGgCUCCGG--------GGGCUC---CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 90621 0.68 0.260078
Target:  5'- --uCCCCCGAGGCggCCCGcGGGCGc- -3'
miRNA:   3'- uacGGGGGCUCCGg-GGGCuCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 141606 0.69 0.254321
Target:  5'- -cGCCCggCGAGGCUgCCGGgaucGGGCGGGu -3'
miRNA:   3'- uaCGGGg-GCUCCGGgGGCU----CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 28317 0.69 0.254321
Target:  5'- -cGUCCCCGGGGCgcccgcCCCCGGGGuuCGAu -3'
miRNA:   3'- uaCGGGGGCUCCG------GGGGCUCCc-GCUc -5'
29635 3' -67.6 NC_006151.1 + 116839 0.69 0.248669
Target:  5'- -gGUCCUCGGGGUUCUCGGcGGCGGGg -3'
miRNA:   3'- uaCGGGGGCUCCGGGGGCUcCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 36391 0.69 0.248669
Target:  5'- -gGCCCCCGGcGGCCCC---GGGCGc- -3'
miRNA:   3'- uaCGGGGGCU-CCGGGGgcuCCCGCuc -5'
29635 3' -67.6 NC_006151.1 + 107374 0.69 0.248669
Target:  5'- --aUCCCCGGGcugcCCCCCGAGuuGGCGGGg -3'
miRNA:   3'- uacGGGGGCUCc---GGGGGCUC--CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 33947 0.69 0.243122
Target:  5'- -cGCCCCgGGGGCUC---GGGGCGGGa -3'
miRNA:   3'- uaCGGGGgCUCCGGGggcUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 3674 0.69 0.237677
Target:  5'- -cGUCCCCGGGGCggcgggCCCCGGGcGcGCGGc -3'
miRNA:   3'- uaCGGGGGCUCCG------GGGGCUC-C-CGCUc -5'
29635 3' -67.6 NC_006151.1 + 8314 0.69 0.232336
Target:  5'- -cG-CCCCGA-GCCCCCGGGGcgcGCGGGc -3'
miRNA:   3'- uaCgGGGGCUcCGGGGGCUCC---CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 21035 0.69 0.227095
Target:  5'- -cGCCCCUGAagaggacGCCCCCGAcgcgcggggucaGGGCGGc -3'
miRNA:   3'- uaCGGGGGCUc------CGGGGGCU------------CCCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.