Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29635 | 3' | -67.6 | NC_006151.1 | + | 111395 | 0.7 | 0.202378 |
Target: 5'- -cGCCgCCGGcaCCCCCGccGGGGCGGGa -3' miRNA: 3'- uaCGGgGGCUccGGGGGC--UCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 89226 | 0.7 | 0.207127 |
Target: 5'- uUGCCgCCGccGCCCCCGuuGGGCGu- -3' miRNA: 3'- uACGGgGGCucCGGGGGCu-CCCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 134976 | 0.7 | 0.207127 |
Target: 5'- -aGCCUCCG-GGCCUUCucGGGCGGGc -3' miRNA: 3'- uaCGGGGGCuCCGGGGGcuCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 4193 | 0.7 | 0.207127 |
Target: 5'- --cUCCUCGAGGCaggcgggCCCGAGGGCGGc -3' miRNA: 3'- uacGGGGGCUCCGg------GGGCUCCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 82405 | 0.7 | 0.211972 |
Target: 5'- -cGCgCCCGAgggcGGCCCCgaGAGGcGCGGGc -3' miRNA: 3'- uaCGgGGGCU----CCGGGGg-CUCC-CGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 21035 | 0.69 | 0.227095 |
Target: 5'- -cGCCCCUGAagaggacGCCCCCGAcgcgcggggucaGGGCGGc -3' miRNA: 3'- uaCGGGGGCUc------CGGGGGCU------------CCCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 8314 | 0.69 | 0.232336 |
Target: 5'- -cG-CCCCGA-GCCCCCGGGGcgcGCGGGc -3' miRNA: 3'- uaCgGGGGCUcCGGGGGCUCC---CGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 3674 | 0.69 | 0.237677 |
Target: 5'- -cGUCCCCGGGGCggcgggCCCCGGGcGcGCGGc -3' miRNA: 3'- uaCGGGGGCUCCG------GGGGCUC-C-CGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 33947 | 0.69 | 0.243122 |
Target: 5'- -cGCCCCgGGGGCUC---GGGGCGGGa -3' miRNA: 3'- uaCGGGGgCUCCGGGggcUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 36391 | 0.69 | 0.248669 |
Target: 5'- -gGCCCCCGGcGGCCCC---GGGCGc- -3' miRNA: 3'- uaCGGGGGCU-CCGGGGgcuCCCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 107374 | 0.69 | 0.248669 |
Target: 5'- --aUCCCCGGGcugcCCCCCGAGuuGGCGGGg -3' miRNA: 3'- uacGGGGGCUCc---GGGGGCUC--CCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 116839 | 0.69 | 0.248669 |
Target: 5'- -gGUCCUCGGGGUUCUCGGcGGCGGGg -3' miRNA: 3'- uaCGGGGGCUCCGGGGGCUcCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 141606 | 0.69 | 0.254321 |
Target: 5'- -cGCCCggCGAGGCUgCCGGgaucGGGCGGGu -3' miRNA: 3'- uaCGGGg-GCUCCGGgGGCU----CCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 28317 | 0.69 | 0.254321 |
Target: 5'- -cGUCCCCGGGGCgcccgcCCCCGGGGuuCGAu -3' miRNA: 3'- uaCGGGGGCUCCG------GGGGCUCCc-GCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 46717 | 0.68 | 0.260078 |
Target: 5'- gGUGCCUCgGGGGCCggggccggCCCGGGgucGGCGAa -3' miRNA: 3'- -UACGGGGgCUCCGG--------GGGCUC---CCGCUc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 90621 | 0.68 | 0.260078 |
Target: 5'- --uCCCCCGAGGCggCCCGcGGGCGc- -3' miRNA: 3'- uacGGGGGCUCCGg-GGGCuCCCGCuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 101912 | 0.68 | 0.265941 |
Target: 5'- cAUGCCCaagCGGcgccGGCCCCCGuggccGGCGAGc -3' miRNA: 3'- -UACGGGg--GCU----CCGGGGGCuc---CCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 123743 | 0.68 | 0.268316 |
Target: 5'- cAUGCCCgCUGuGGCggucuuuggcgcgggCCCCGGGGGCa-- -3' miRNA: 3'- -UACGGG-GGCuCCG---------------GGGGCUCCCGcuc -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 13893 | 0.68 | 0.269509 |
Target: 5'- cGUGCCCCCauuggcgauuuaucGAucgcuuuccgaagGGaucgaaCCCCGGGGGCGGGc -3' miRNA: 3'- -UACGGGGG--------------CU-------------CCg-----GGGGCUCCCGCUC- -5' |
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29635 | 3' | -67.6 | NC_006151.1 | + | 107873 | 0.68 | 0.270108 |
Target: 5'- -gGCCCCCccgGAGGCCCCCcAGGcccagccgcccgccGCGGc -3' miRNA: 3'- uaCGGGGG---CUCCGGGGGcUCC--------------CGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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