miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29635 3' -67.6 NC_006151.1 + 28250 0.66 0.382179
Target:  5'- -gGCCCauuggCCGGGGCCucacacgugggcCCCGGGGacGCGGGc -3'
miRNA:   3'- uaCGGG-----GGCUCCGG------------GGGCUCC--CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 88790 0.66 0.385289
Target:  5'- -cGCCCUcgacgacgacgggcgCGAGcGCgUCCGGuGGGCGAGg -3'
miRNA:   3'- uaCGGGG---------------GCUC-CGgGGGCU-CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 114691 0.66 0.389986
Target:  5'- cGUGCUCgaaGGGcgcGUCCCCGGGGGCGGu -3'
miRNA:   3'- -UACGGGgg-CUC---CGGGGGCUCCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 20297 0.66 0.389986
Target:  5'- -gGgCCCCGGGcGCCCgCCGuggcguuggcGGcGGCGAGc -3'
miRNA:   3'- uaCgGGGGCUC-CGGG-GGC----------UC-CCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 65767 0.66 0.389986
Target:  5'- -cGUCCCCGucGCCgCCGGcGGCGGc -3'
miRNA:   3'- uaCGGGGGCucCGGgGGCUcCCGCUc -5'
29635 3' -67.6 NC_006151.1 + 50023 0.66 0.374476
Target:  5'- -gGCCCgCGcGGcGCCCCCGGGcGCGGc -3'
miRNA:   3'- uaCGGGgGC-UC-CGGGGGCUCcCGCUc -5'
29635 3' -67.6 NC_006151.1 + 27337 0.66 0.373711
Target:  5'- cUGCuCCCCGggaccggggucguGGGCCggggCCCGGgcgggucgacGGGCGAGa -3'
miRNA:   3'- uACG-GGGGC-------------UCCGG----GGGCU----------CCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 122428 0.67 0.337565
Target:  5'- -cGCCgCCGAGGCCCggGAGGcG-GAGg -3'
miRNA:   3'- uaCGGgGGCUCCGGGggCUCC-CgCUC- -5'
29635 3' -67.6 NC_006151.1 + 13991 0.67 0.344731
Target:  5'- -cGUCCCCGGGGCCCaCGu--GUGAGg -3'
miRNA:   3'- uaCGGGGGCUCCGGGgGCuccCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 27164 0.67 0.344731
Target:  5'- -cGgCCCCGAGGCgCCgCGugucGGGGCGccAGg -3'
miRNA:   3'- uaCgGGGGCUCCG-GGgGC----UCCCGC--UC- -5'
29635 3' -67.6 NC_006151.1 + 41538 0.67 0.344731
Target:  5'- -aGCCCCCGcccgcGGaCCCCCGgugcgacggaaGGGGCa-- -3'
miRNA:   3'- uaCGGGGGCu----CC-GGGGGC-----------UCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 66908 0.67 0.344731
Target:  5'- -cGCCgCCGAGGagggCCacgauggaggCGGGGGCGAGg -3'
miRNA:   3'- uaCGGgGGCUCCg---GGg---------GCUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 17799 0.67 0.345454
Target:  5'- -cGCCCCCccGGaCCCCCccuccugggcgcggcGGGGCGGGc -3'
miRNA:   3'- uaCGGGGGcuCC-GGGGGc--------------UCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 46570 0.66 0.349812
Target:  5'- -cGCuCCCCGcgcaGGGCCCgacgggcggccgugCUGAGGcGCGAGc -3'
miRNA:   3'- uaCG-GGGGC----UCCGGG--------------GGCUCC-CGCUC- -5'
29635 3' -67.6 NC_006151.1 + 21571 0.66 0.352006
Target:  5'- -aGCCCgCCGAGGgCCgCGcGGGGuCGAu -3'
miRNA:   3'- uaCGGG-GGCUCCgGGgGC-UCCC-GCUc -5'
29635 3' -67.6 NC_006151.1 + 130706 0.66 0.359388
Target:  5'- -gGCCCgaCGGGGCggCCCGGGGGCc-- -3'
miRNA:   3'- uaCGGGg-GCUCCGg-GGGCUCCCGcuc -5'
29635 3' -67.6 NC_006151.1 + 108656 0.66 0.366879
Target:  5'- -cGCCCgCgGAGGUCCCCccucagcagccgGAGcGGCGGc -3'
miRNA:   3'- uaCGGG-GgCUCCGGGGG------------CUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 38121 0.66 0.366879
Target:  5'- --aUCCCCGGGGCCggcccggCCGAGcGGCGGc -3'
miRNA:   3'- uacGGGGGCUCCGGg------GGCUC-CCGCUc -5'
29635 3' -67.6 NC_006151.1 + 46628 0.66 0.369905
Target:  5'- gGUGCCUgCGAcgcGGCCggacgggcggacaggCCC-AGGGCGAGa -3'
miRNA:   3'- -UACGGGgGCU---CCGG---------------GGGcUCCCGCUC- -5'
29635 3' -67.6 NC_006151.1 + 142722 0.66 0.372186
Target:  5'- --uCCCCCG-GGCCCCCacaacucucuggccGGGGGCc-- -3'
miRNA:   3'- uacGGGGGCuCCGGGGG--------------CUCCCGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.