miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 3' -56.1 NC_006151.1 + 141254 0.7 0.691272
Target:  5'- gGGCgagGAgaUCCAGUcgcggGGCCUCGGCGGCu -3'
miRNA:   3'- -UCGa--CUggAGGUCG-----CUGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 140260 0.67 0.824684
Target:  5'- cGCUGcuACCUCC-GCGACacgcccgUCGACGAg -3'
miRNA:   3'- uCGAC--UGGAGGuCGCUGg------AGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 137437 0.7 0.65022
Target:  5'- gGGUccGCCUCC-GCGGCCUccucCGACGACg -3'
miRNA:   3'- -UCGacUGGAGGuCGCUGGA----GCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 137221 0.66 0.872623
Target:  5'- cGGCUGGCCgugaCCAacauCGuCCUCGACGu- -3'
miRNA:   3'- -UCGACUGGa---GGUc---GCuGGAGCUGUug -5'
29636 3' -56.1 NC_006151.1 + 136331 0.68 0.779782
Target:  5'- cGCgugGACCccaaccCCAGCGGCCUgGACcccGCg -3'
miRNA:   3'- uCGa--CUGGa-----GGUCGCUGGAgCUGu--UG- -5'
29636 3' -56.1 NC_006151.1 + 136158 0.69 0.711532
Target:  5'- cGCUGGCCgccuUCCGGCG-CCUCuACGGg -3'
miRNA:   3'- uCGACUGG----AGGUCGCuGGAGcUGUUg -5'
29636 3' -56.1 NC_006151.1 + 133480 0.67 0.841456
Target:  5'- aGGC-GGCCgCgGGCGucACCUUGGCGGCg -3'
miRNA:   3'- -UCGaCUGGaGgUCGC--UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 132165 0.71 0.619247
Target:  5'- cAGCUGcgcgGCCggcaCCGGCGcGCC-CGACAGCa -3'
miRNA:   3'- -UCGAC----UGGa---GGUCGC-UGGaGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 130688 0.66 0.865145
Target:  5'- cGGCgcagGAUgUCCGGgGGCC-CGACGGg -3'
miRNA:   3'- -UCGa---CUGgAGGUCgCUGGaGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 126435 0.7 0.681061
Target:  5'- cGCcGGCaCUaCCAGCG-CCUCGAgAGCg -3'
miRNA:   3'- uCGaCUG-GA-GGUCGCuGGAGCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 126001 0.7 0.690253
Target:  5'- uGCUGcgcggcaucGCCaacuucuUCCAG-GGCCUCGGCGACg -3'
miRNA:   3'- uCGAC---------UGG-------AGGUCgCUGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 125646 0.66 0.879881
Target:  5'- gGGCgUGAUCgagggCCAGCucGGCgaCGACAACg -3'
miRNA:   3'- -UCG-ACUGGa----GGUCG--CUGgaGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 124975 0.74 0.441529
Target:  5'- cAGCUgGACCUgCAGCGcgugcACCUgGGCGACu -3'
miRNA:   3'- -UCGA-CUGGAgGUCGC-----UGGAgCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 123096 0.71 0.619247
Target:  5'- cGCgGACCgCCucucGCGGCgCUCGGCGGCg -3'
miRNA:   3'- uCGaCUGGaGGu---CGCUG-GAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 122964 0.66 0.872623
Target:  5'- gGGCgcgGACg-CCGGCGACgggggcgUCGGCGACg -3'
miRNA:   3'- -UCGa--CUGgaGGUCGCUGg------AGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 122594 0.67 0.856674
Target:  5'- uGGCUGGCgUCCAcgaaccaggcgguGCGGgcCCUCGACc-- -3'
miRNA:   3'- -UCGACUGgAGGU-------------CGCU--GGAGCUGuug -5'
29636 3' -56.1 NC_006151.1 + 121944 0.71 0.639899
Target:  5'- cGCUGGCCgccgCCGGCGACgaCGcCGAg -3'
miRNA:   3'- uCGACUGGa---GGUCGCUGgaGCuGUUg -5'
29636 3' -56.1 NC_006151.1 + 121327 0.68 0.789067
Target:  5'- aGGC-GGCCgCCGagcuggugcGCGACCUCGAgGGCc -3'
miRNA:   3'- -UCGaCUGGaGGU---------CGCUGGAGCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 118891 0.73 0.507893
Target:  5'- cGGCgacgcGGCCgCCGGCGGCCUCGA--GCg -3'
miRNA:   3'- -UCGa----CUGGaGGUCGCUGGAGCUguUG- -5'
29636 3' -56.1 NC_006151.1 + 116777 0.66 0.893719
Target:  5'- cAGCgUGugCUCCAGCcGCUgggUGGCGAg -3'
miRNA:   3'- -UCG-ACugGAGGUCGcUGGa--GCUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.