miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 3' -56.1 NC_006151.1 + 57285 0.77 0.303344
Target:  5'- cAGCagGGCgUCCAGCGcgGCCUUGGCGGCg -3'
miRNA:   3'- -UCGa-CUGgAGGUCGC--UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 105689 0.77 0.325123
Target:  5'- cGGCgcggGGCCgacgCCGGCGcggccgcgcGCCUCGACGGCg -3'
miRNA:   3'- -UCGa---CUGGa---GGUCGC---------UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 109934 0.77 0.325123
Target:  5'- cGCcGGCCUCUccccugGGCGGCCUCGGCcGCg -3'
miRNA:   3'- uCGaCUGGAGG------UCGCUGGAGCUGuUG- -5'
29636 3' -56.1 NC_006151.1 + 57604 0.75 0.388747
Target:  5'- aGGCcGGCCUCggccgCGGCcGCCUCGACGGCg -3'
miRNA:   3'- -UCGaCUGGAG-----GUCGcUGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 71721 0.75 0.397254
Target:  5'- aGGCgauccaGGCCUCCAGCG-CCUCGAacACg -3'
miRNA:   3'- -UCGa-----CUGGAGGUCGCuGGAGCUguUG- -5'
29636 3' -56.1 NC_006151.1 + 3960 0.75 0.40588
Target:  5'- gGGCccgGGCCgCgCGGCGGCCUCGGCGAg -3'
miRNA:   3'- -UCGa--CUGGaG-GUCGCUGGAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 124975 0.74 0.441529
Target:  5'- cAGCUgGACCUgCAGCGcgugcACCUgGGCGACu -3'
miRNA:   3'- -UCGA-CUGGAgGUCGC-----UGGAgCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 84924 0.73 0.478886
Target:  5'- cGGCgccGCCUCCGGCGugCUCuuCGGCa -3'
miRNA:   3'- -UCGac-UGGAGGUCGCugGAGcuGUUG- -5'
29636 3' -56.1 NC_006151.1 + 107534 0.73 0.478886
Target:  5'- cGUUGGCC-CCGGCGGCCcCGcCGGCg -3'
miRNA:   3'- uCGACUGGaGGUCGCUGGaGCuGUUG- -5'
29636 3' -56.1 NC_006151.1 + 118891 0.73 0.507893
Target:  5'- cGGCgacgcGGCCgCCGGCGGCCUCGA--GCg -3'
miRNA:   3'- -UCGa----CUGGaGGUCGCUGGAGCUguUG- -5'
29636 3' -56.1 NC_006151.1 + 100115 0.72 0.547662
Target:  5'- cGCUGGCggCCAGCGccuuCCUCGGgGACc -3'
miRNA:   3'- uCGACUGgaGGUCGCu---GGAGCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 109278 0.72 0.55574
Target:  5'- cGCUGGCCgcccccuccgagaUCgAGCGgcccgccGCCUCGGCGGCa -3'
miRNA:   3'- uCGACUGG-------------AGgUCGC-------UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 49051 0.72 0.578121
Target:  5'- gGGCUGGCCUUCAGCGuCCggcgCGGgGu- -3'
miRNA:   3'- -UCGACUGGAGGUCGCuGGa---GCUgUug -5'
29636 3' -56.1 NC_006151.1 + 60946 0.72 0.588361
Target:  5'- gAGCUG-CC-CCAGCguggacauGACCUCGuCGACg -3'
miRNA:   3'- -UCGACuGGaGGUCG--------CUGGAGCuGUUG- -5'
29636 3' -56.1 NC_006151.1 + 36055 0.71 0.598634
Target:  5'- cGGCgagGAUCUCCucuucggcccgGGCGGCCUcuucucCGACGACg -3'
miRNA:   3'- -UCGa--CUGGAGG-----------UCGCUGGA------GCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 100145 0.71 0.607901
Target:  5'- uGCUGGcacgcgcCCUCCGGCGccGCCUgGAgGACa -3'
miRNA:   3'- uCGACU-------GGAGGUCGC--UGGAgCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 29498 0.71 0.619247
Target:  5'- cGCUGGCCUCgAGCcagcCCUCcGCGGCg -3'
miRNA:   3'- uCGACUGGAGgUCGcu--GGAGcUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 132165 0.71 0.619247
Target:  5'- cAGCUGcgcgGCCggcaCCGGCGcGCC-CGACAGCa -3'
miRNA:   3'- -UCGAC----UGGa---GGUCGC-UGGaGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 123096 0.71 0.619247
Target:  5'- cGCgGACCgCCucucGCGGCgCUCGGCGGCg -3'
miRNA:   3'- uCGaCUGGaGGu---CGCUG-GAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 121944 0.71 0.639899
Target:  5'- cGCUGGCCgccgCCGGCGACgaCGcCGAg -3'
miRNA:   3'- uCGACUGGa---GGUCGCUGgaGCuGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.