miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 3' -56.1 NC_006151.1 + 57248 0.71 0.639899
Target:  5'- cGGCcucGGCgUCCGcGCGGcCCUCGACGGCc -3'
miRNA:   3'- -UCGa--CUGgAGGU-CGCU-GGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 137437 0.7 0.65022
Target:  5'- gGGUccGCCUCC-GCGGCCUccucCGACGACg -3'
miRNA:   3'- -UCGacUGGAGGuCGCUGGA----GCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 87345 0.7 0.660527
Target:  5'- uGCcgGGCCUCCAG-GGCCU-GGCGGCc -3'
miRNA:   3'- uCGa-CUGGAGGUCgCUGGAgCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 82211 0.7 0.681061
Target:  5'- gAGaugaUGACCUCCAGCGGCaggaaggagCG-CAGCg -3'
miRNA:   3'- -UCg---ACUGGAGGUCGCUGga-------GCuGUUG- -5'
29636 3' -56.1 NC_006151.1 + 102511 0.7 0.681061
Target:  5'- cGGCgcggGACC-CCGGCGGCgUCuACGACc -3'
miRNA:   3'- -UCGa---CUGGaGGUCGCUGgAGcUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 126435 0.7 0.681061
Target:  5'- cGCcGGCaCUaCCAGCG-CCUCGAgAGCg -3'
miRNA:   3'- uCGaCUG-GA-GGUCGCuGGAGCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 126001 0.7 0.690253
Target:  5'- uGCUGcgcggcaucGCCaacuucuUCCAG-GGCCUCGGCGACg -3'
miRNA:   3'- uCGAC---------UGG-------AGGUCgCUGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 141254 0.7 0.691272
Target:  5'- gGGCgagGAgaUCCAGUcgcggGGCCUCGGCGGCu -3'
miRNA:   3'- -UCGa--CUggAGGUCG-----CUGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 136158 0.69 0.711532
Target:  5'- cGCUGGCCgccuUCCGGCG-CCUCuACGGg -3'
miRNA:   3'- uCGACUGG----AGGUCGCuGGAGcUGUUg -5'
29636 3' -56.1 NC_006151.1 + 62276 0.69 0.721564
Target:  5'- cGCcGGCCUUCuGCGugCUCGuggcCAGCg -3'
miRNA:   3'- uCGaCUGGAGGuCGCugGAGCu---GUUG- -5'
29636 3' -56.1 NC_006151.1 + 81988 0.69 0.721564
Target:  5'- gGGCUGcACCa-CGGCGGCCagGGCGGCc -3'
miRNA:   3'- -UCGAC-UGGagGUCGCUGGagCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 78132 0.69 0.741384
Target:  5'- cGGCgGGCCgCgGGCG-CCUCgGACGACg -3'
miRNA:   3'- -UCGaCUGGaGgUCGCuGGAG-CUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 36337 0.69 0.741384
Target:  5'- cGGCUccgGGCC-CCGGCcgccGACCcCGGCAGCa -3'
miRNA:   3'- -UCGA---CUGGaGGUCG----CUGGaGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 61816 0.69 0.741384
Target:  5'- cAGCgugGugCUCUAcGCGGCgUCGACggUg -3'
miRNA:   3'- -UCGa--CugGAGGU-CGCUGgAGCUGuuG- -5'
29636 3' -56.1 NC_006151.1 + 27255 0.69 0.751152
Target:  5'- gGGCgggGGCCcguacUCGGgGugCUCGACGACg -3'
miRNA:   3'- -UCGa--CUGGa----GGUCgCugGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 50736 0.69 0.755031
Target:  5'- cAGCUGccccgGCC-CCGGCaacggagcaucaacGCCUCGACGACg -3'
miRNA:   3'- -UCGAC-----UGGaGGUCGc-------------UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 67785 0.68 0.760815
Target:  5'- gGGCguccacGugCUCCAcGCGGCaCUCGcgGCAGCa -3'
miRNA:   3'- -UCGa-----CugGAGGU-CGCUG-GAGC--UGUUG- -5'
29636 3' -56.1 NC_006151.1 + 103799 0.68 0.760815
Target:  5'- cGCUGcagGCCgcgcugUCGGCGGCCguggCGGCGGCc -3'
miRNA:   3'- uCGAC---UGGa-----GGUCGCUGGa---GCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 14194 0.68 0.770361
Target:  5'- cGgUGACgUCggCAuCGGCCUCGACGACg -3'
miRNA:   3'- uCgACUGgAG--GUcGCUGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 63681 0.68 0.770361
Target:  5'- uAGCcaGACCUCCgacugGGCGugCgcguucgCGGCGACg -3'
miRNA:   3'- -UCGa-CUGGAGG-----UCGCugGa------GCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.