Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29636 | 3' | -56.1 | NC_006151.1 | + | 64795 | 0.68 | 0.771309 |
Target: 5'- gAGCUGGCCacgcccucgcggaagCCGGCGGCCagcuccuccUCGAgGAUg -3' miRNA: 3'- -UCGACUGGa--------------GGUCGCUGG---------AGCUgUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 136331 | 0.68 | 0.779782 |
Target: 5'- cGCgugGACCccaaccCCAGCGGCCUgGACcccGCg -3' miRNA: 3'- uCGa--CUGGa-----GGUCGCUGGAgCUGu--UG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 121327 | 0.68 | 0.789067 |
Target: 5'- aGGC-GGCCgCCGagcuggugcGCGACCUCGAgGGCc -3' miRNA: 3'- -UCGaCUGGaGGU---------CGCUGGAGCUgUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 2415 | 0.68 | 0.789067 |
Target: 5'- cGGCgaGGCC-CCGGCGGCCgcaggaGACGAa -3' miRNA: 3'- -UCGa-CUGGaGGUCGCUGGag----CUGUUg -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 46854 | 0.68 | 0.79821 |
Target: 5'- gGGCgGGCCUCCGGCGucuAgCUCGuCGGg -3' miRNA: 3'- -UCGaCUGGAGGUCGC---UgGAGCuGUUg -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 74442 | 0.68 | 0.79821 |
Target: 5'- cGUUGACgcgcagCUCCGGCaGGCgCUCGGCGAg -3' miRNA: 3'- uCGACUG------GAGGUCG-CUG-GAGCUGUUg -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 81477 | 0.68 | 0.807199 |
Target: 5'- aGGCUGAagggcucgUUCCAcGCGGCCgUCGGCGAg -3' miRNA: 3'- -UCGACUg-------GAGGU-CGCUGG-AGCUGUUg -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 6144 | 0.67 | 0.816027 |
Target: 5'- cGC-GGCCgcgaggaCGGCGGCCUCGGCcucGGCg -3' miRNA: 3'- uCGaCUGGag-----GUCGCUGGAGCUG---UUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 81522 | 0.67 | 0.816027 |
Target: 5'- cGCgUGAgCU-CGGCGGCCgCGGCGGCg -3' miRNA: 3'- uCG-ACUgGAgGUCGCUGGaGCUGUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 50604 | 0.67 | 0.823826 |
Target: 5'- cAGCgGGCC-CCgcgccgccgcggcAGCGugcacGCCUCGGCGACg -3' miRNA: 3'- -UCGaCUGGaGG-------------UCGC-----UGGAGCUGUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 140260 | 0.67 | 0.824684 |
Target: 5'- cGCUGcuACCUCC-GCGACacgcccgUCGACGAg -3' miRNA: 3'- uCGAC--UGGAGGuCGCUGg------AGCUGUUg -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 63734 | 0.67 | 0.824684 |
Target: 5'- aGGCgccacACCUCCGGCG-CgUCGGCGGg -3' miRNA: 3'- -UCGac---UGGAGGUCGCuGgAGCUGUUg -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 104291 | 0.67 | 0.833163 |
Target: 5'- cGCUGcagGCgCUgCAGCGGCugacguggCUCGACGACu -3' miRNA: 3'- uCGAC---UG-GAgGUCGCUG--------GAGCUGUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 59486 | 0.67 | 0.833163 |
Target: 5'- aGGCgc-CCUcgaagagcCCGGCGGCCUCcGCGACg -3' miRNA: 3'- -UCGacuGGA--------GGUCGCUGGAGcUGUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 65147 | 0.67 | 0.833163 |
Target: 5'- cAGCgacgUGAUCUUCAGCG-CCUUG-CGGCg -3' miRNA: 3'- -UCG----ACUGGAGGUCGCuGGAGCuGUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 110017 | 0.67 | 0.841456 |
Target: 5'- gAGCUgGACC-CCuGgGGCCUgGAgGACg -3' miRNA: 3'- -UCGA-CUGGaGGuCgCUGGAgCUgUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 58359 | 0.67 | 0.841456 |
Target: 5'- aAGCUGGuCCgCCGcgucGUGAUCUCGACGGa -3' miRNA: 3'- -UCGACU-GGaGGU----CGCUGGAGCUGUUg -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 133480 | 0.67 | 0.841456 |
Target: 5'- aGGC-GGCCgCgGGCGucACCUUGGCGGCg -3' miRNA: 3'- -UCGaCUGGaGgUCGC--UGGAGCUGUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 54423 | 0.67 | 0.841456 |
Target: 5'- cGCUGGCg--CGGCG-CUUCGGCGACg -3' miRNA: 3'- uCGACUGgagGUCGCuGGAGCUGUUG- -5' |
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29636 | 3' | -56.1 | NC_006151.1 | + | 62570 | 0.67 | 0.849556 |
Target: 5'- uGCUGGCCcccgggUCgGGCGACgacgagUUUGACGACg -3' miRNA: 3'- uCGACUGG------AGgUCGCUG------GAGCUGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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