miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 3' -56.1 NC_006151.1 + 100338 0.66 0.886915
Target:  5'- gGGCacgUGGCgUCUGGCgGACgUCGugGACg -3'
miRNA:   3'- -UCG---ACUGgAGGUCG-CUGgAGCugUUG- -5'
29636 3' -56.1 NC_006151.1 + 107599 0.66 0.891702
Target:  5'- aAGCUGGCCccgCCGGCGccgccgcccgccaaGCCcguggaGACGACc -3'
miRNA:   3'- -UCGACUGGa--GGUCGC--------------UGGag----CUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 116777 0.66 0.893719
Target:  5'- cAGCgUGugCUCCAGCcGCUgggUGGCGAg -3'
miRNA:   3'- -UCG-ACugGAGGUCGcUGGa--GCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 77608 0.66 0.893719
Target:  5'- gAGCUgGACCUCU-GCGGCCgcgCGG-AGCu -3'
miRNA:   3'- -UCGA-CUGGAGGuCGCUGGa--GCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 35740 0.66 0.893719
Target:  5'- ---cGGCuCUCCGGCGGcuaucagcCCUCGACGGa -3'
miRNA:   3'- ucgaCUG-GAGGUCGCU--------GGAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 122964 0.66 0.872623
Target:  5'- gGGCgcgGACg-CCGGCGACgggggcgUCGGCGACg -3'
miRNA:   3'- -UCGa--CUGgaGGUCGCUGg------AGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 55491 0.66 0.872623
Target:  5'- cGCgGACggCCAGCcgccgcggGACCUCGGCcACg -3'
miRNA:   3'- uCGaCUGgaGGUCG--------CUGGAGCUGuUG- -5'
29636 3' -56.1 NC_006151.1 + 54423 0.67 0.841456
Target:  5'- cGCUGGCg--CGGCG-CUUCGGCGACg -3'
miRNA:   3'- uCGACUGgagGUCGCuGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 58359 0.67 0.841456
Target:  5'- aAGCUGGuCCgCCGcgucGUGAUCUCGACGGa -3'
miRNA:   3'- -UCGACU-GGaGGU----CGCUGGAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 133480 0.67 0.841456
Target:  5'- aGGC-GGCCgCgGGCGucACCUUGGCGGCg -3'
miRNA:   3'- -UCGaCUGGaGgUCGC--UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 62570 0.67 0.849556
Target:  5'- uGCUGGCCcccgggUCgGGCGACgacgagUUUGACGACg -3'
miRNA:   3'- uCGACUGG------AGgUCGCUG------GAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 95085 0.67 0.85274
Target:  5'- cGCUGGCgUCCaugacgccguagagcAGCu-CCUCGGCGAUg -3'
miRNA:   3'- uCGACUGgAGG---------------UCGcuGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 122594 0.67 0.856674
Target:  5'- uGGCUGGCgUCCAcgaaccaggcgguGCGGgcCCUCGACc-- -3'
miRNA:   3'- -UCGACUGgAGGU-------------CGCU--GGAGCUGuug -5'
29636 3' -56.1 NC_006151.1 + 81648 0.66 0.865145
Target:  5'- uGCUGgucgaaggGCUUCCcccgcacggagcGGCGguacGCCUCGGCGACg -3'
miRNA:   3'- uCGAC--------UGGAGG------------UCGC----UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 52990 0.66 0.865145
Target:  5'- cGCUGACCUCgCGGUG-CgaCGAguACa -3'
miRNA:   3'- uCGACUGGAG-GUCGCuGgaGCUguUG- -5'
29636 3' -56.1 NC_006151.1 + 112884 0.66 0.865145
Target:  5'- cGGCUG-CUUCC-GC-ACCgUCGGCGACa -3'
miRNA:   3'- -UCGACuGGAGGuCGcUGG-AGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 130688 0.66 0.865145
Target:  5'- cGGCgcagGAUgUCCGGgGGCC-CGACGGg -3'
miRNA:   3'- -UCGa---CUGgAGGUCgCUGGaGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 112038 0.66 0.872623
Target:  5'- gAGCUGGgg-CCGGCGGgCgggCGGCGGCg -3'
miRNA:   3'- -UCGACUggaGGUCGCUgGa--GCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 137221 0.66 0.872623
Target:  5'- cGGCUGGCCgugaCCAacauCGuCCUCGACGu- -3'
miRNA:   3'- -UCGACUGGa---GGUc---GCuGGAGCUGUug -5'
29636 3' -56.1 NC_006151.1 + 52011 0.66 0.872623
Target:  5'- cAGCUugcGCCgcgCCAGCu-CCUCGGCGAa -3'
miRNA:   3'- -UCGAc--UGGa--GGUCGcuGGAGCUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.