miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 3' -56.1 NC_006151.1 + 112884 0.66 0.865145
Target:  5'- cGGCUG-CUUCC-GC-ACCgUCGGCGACa -3'
miRNA:   3'- -UCGACuGGAGGuCGcUGG-AGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 130688 0.66 0.865145
Target:  5'- cGGCgcagGAUgUCCGGgGGCC-CGACGGg -3'
miRNA:   3'- -UCGa---CUGgAGGUCgCUGGaGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 52990 0.66 0.865145
Target:  5'- cGCUGACCUCgCGGUG-CgaCGAguACa -3'
miRNA:   3'- uCGACUGGAG-GUCGCuGgaGCUguUG- -5'
29636 3' -56.1 NC_006151.1 + 122594 0.67 0.856674
Target:  5'- uGGCUGGCgUCCAcgaaccaggcgguGCGGgcCCUCGACc-- -3'
miRNA:   3'- -UCGACUGgAGGU-------------CGCU--GGAGCUGuug -5'
29636 3' -56.1 NC_006151.1 + 95085 0.67 0.85274
Target:  5'- cGCUGGCgUCCaugacgccguagagcAGCu-CCUCGGCGAUg -3'
miRNA:   3'- uCGACUGgAGG---------------UCGcuGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 62570 0.67 0.849556
Target:  5'- uGCUGGCCcccgggUCgGGCGACgacgagUUUGACGACg -3'
miRNA:   3'- uCGACUGG------AGgUCGCUG------GAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 133480 0.67 0.841456
Target:  5'- aGGC-GGCCgCgGGCGucACCUUGGCGGCg -3'
miRNA:   3'- -UCGaCUGGaGgUCGC--UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 58359 0.67 0.841456
Target:  5'- aAGCUGGuCCgCCGcgucGUGAUCUCGACGGa -3'
miRNA:   3'- -UCGACU-GGaGGU----CGCUGGAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 54423 0.67 0.841456
Target:  5'- cGCUGGCg--CGGCG-CUUCGGCGACg -3'
miRNA:   3'- uCGACUGgagGUCGCuGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 110017 0.67 0.841456
Target:  5'- gAGCUgGACC-CCuGgGGCCUgGAgGACg -3'
miRNA:   3'- -UCGA-CUGGaGGuCgCUGGAgCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 65147 0.67 0.833163
Target:  5'- cAGCgacgUGAUCUUCAGCG-CCUUG-CGGCg -3'
miRNA:   3'- -UCG----ACUGGAGGUCGCuGGAGCuGUUG- -5'
29636 3' -56.1 NC_006151.1 + 59486 0.67 0.833163
Target:  5'- aGGCgc-CCUcgaagagcCCGGCGGCCUCcGCGACg -3'
miRNA:   3'- -UCGacuGGA--------GGUCGCUGGAGcUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 104291 0.67 0.833163
Target:  5'- cGCUGcagGCgCUgCAGCGGCugacguggCUCGACGACu -3'
miRNA:   3'- uCGAC---UG-GAgGUCGCUG--------GAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 140260 0.67 0.824684
Target:  5'- cGCUGcuACCUCC-GCGACacgcccgUCGACGAg -3'
miRNA:   3'- uCGAC--UGGAGGuCGCUGg------AGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 63734 0.67 0.824684
Target:  5'- aGGCgccacACCUCCGGCG-CgUCGGCGGg -3'
miRNA:   3'- -UCGac---UGGAGGUCGCuGgAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 50604 0.67 0.823826
Target:  5'- cAGCgGGCC-CCgcgccgccgcggcAGCGugcacGCCUCGGCGACg -3'
miRNA:   3'- -UCGaCUGGaGG-------------UCGC-----UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 81522 0.67 0.816027
Target:  5'- cGCgUGAgCU-CGGCGGCCgCGGCGGCg -3'
miRNA:   3'- uCG-ACUgGAgGUCGCUGGaGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 6144 0.67 0.816027
Target:  5'- cGC-GGCCgcgaggaCGGCGGCCUCGGCcucGGCg -3'
miRNA:   3'- uCGaCUGGag-----GUCGCUGGAGCUG---UUG- -5'
29636 3' -56.1 NC_006151.1 + 81477 0.68 0.807199
Target:  5'- aGGCUGAagggcucgUUCCAcGCGGCCgUCGGCGAg -3'
miRNA:   3'- -UCGACUg-------GAGGU-CGCUGG-AGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 74442 0.68 0.79821
Target:  5'- cGUUGACgcgcagCUCCGGCaGGCgCUCGGCGAg -3'
miRNA:   3'- uCGACUG------GAGGUCG-CUG-GAGCUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.