miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 3' -56.1 NC_006151.1 + 57285 0.77 0.303344
Target:  5'- cAGCagGGCgUCCAGCGcgGCCUUGGCGGCg -3'
miRNA:   3'- -UCGa-CUGgAGGUCGC--UGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 57604 0.75 0.388747
Target:  5'- aGGCcGGCCUCggccgCGGCcGCCUCGACGGCg -3'
miRNA:   3'- -UCGaCUGGAG-----GUCGcUGGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 58359 0.67 0.841456
Target:  5'- aAGCUGGuCCgCCGcgucGUGAUCUCGACGGa -3'
miRNA:   3'- -UCGACU-GGaGGU----CGCUGGAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 59486 0.67 0.833163
Target:  5'- aGGCgc-CCUcgaagagcCCGGCGGCCUCcGCGACg -3'
miRNA:   3'- -UCGacuGGA--------GGUCGCUGGAGcUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 60946 0.72 0.588361
Target:  5'- gAGCUG-CC-CCAGCguggacauGACCUCGuCGACg -3'
miRNA:   3'- -UCGACuGGaGGUCG--------CUGGAGCuGUUG- -5'
29636 3' -56.1 NC_006151.1 + 61816 0.69 0.741384
Target:  5'- cAGCgugGugCUCUAcGCGGCgUCGACggUg -3'
miRNA:   3'- -UCGa--CugGAGGU-CGCUGgAGCUGuuG- -5'
29636 3' -56.1 NC_006151.1 + 62276 0.69 0.721564
Target:  5'- cGCcGGCCUUCuGCGugCUCGuggcCAGCg -3'
miRNA:   3'- uCGaCUGGAGGuCGCugGAGCu---GUUG- -5'
29636 3' -56.1 NC_006151.1 + 62570 0.67 0.849556
Target:  5'- uGCUGGCCcccgggUCgGGCGACgacgagUUUGACGACg -3'
miRNA:   3'- uCGACUGG------AGgUCGCUG------GAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 63681 0.68 0.770361
Target:  5'- uAGCcaGACCUCCgacugGGCGugCgcguucgCGGCGACg -3'
miRNA:   3'- -UCGa-CUGGAGG-----UCGCugGa------GCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 63734 0.67 0.824684
Target:  5'- aGGCgccacACCUCCGGCG-CgUCGGCGGg -3'
miRNA:   3'- -UCGac---UGGAGGUCGCuGgAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 64795 0.68 0.771309
Target:  5'- gAGCUGGCCacgcccucgcggaagCCGGCGGCCagcuccuccUCGAgGAUg -3'
miRNA:   3'- -UCGACUGGa--------------GGUCGCUGG---------AGCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 65147 0.67 0.833163
Target:  5'- cAGCgacgUGAUCUUCAGCG-CCUUG-CGGCg -3'
miRNA:   3'- -UCG----ACUGGAGGUCGCuGGAGCuGUUG- -5'
29636 3' -56.1 NC_006151.1 + 67785 0.68 0.760815
Target:  5'- gGGCguccacGugCUCCAcGCGGCaCUCGcgGCAGCa -3'
miRNA:   3'- -UCGa-----CugGAGGU-CGCUG-GAGC--UGUUG- -5'
29636 3' -56.1 NC_006151.1 + 68035 0.66 0.886915
Target:  5'- aGGC-GGCCcgCCGGCGcggcgggcacgGgCUCGGCGACg -3'
miRNA:   3'- -UCGaCUGGa-GGUCGC-----------UgGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 70782 0.66 0.879881
Target:  5'- cGCgcGCCUCCGGCaccggcguGGCCgUCGugGGCa -3'
miRNA:   3'- uCGacUGGAGGUCG--------CUGG-AGCugUUG- -5'
29636 3' -56.1 NC_006151.1 + 71721 0.75 0.397254
Target:  5'- aGGCgauccaGGCCUCCAGCG-CCUCGAacACg -3'
miRNA:   3'- -UCGa-----CUGGAGGUCGCuGGAGCUguUG- -5'
29636 3' -56.1 NC_006151.1 + 74442 0.68 0.79821
Target:  5'- cGUUGACgcgcagCUCCGGCaGGCgCUCGGCGAg -3'
miRNA:   3'- uCGACUG------GAGGUCG-CUG-GAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 77608 0.66 0.893719
Target:  5'- gAGCUgGACCUCU-GCGGCCgcgCGG-AGCu -3'
miRNA:   3'- -UCGA-CUGGAGGuCGCUGGa--GCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 78132 0.69 0.741384
Target:  5'- cGGCgGGCCgCgGGCG-CCUCgGACGACg -3'
miRNA:   3'- -UCGaCUGGaGgUCGCuGGAG-CUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 81477 0.68 0.807199
Target:  5'- aGGCUGAagggcucgUUCCAcGCGGCCgUCGGCGAg -3'
miRNA:   3'- -UCGACUg-------GAGGU-CGCUGG-AGCUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.