miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 3' -56.1 NC_006151.1 + 35740 0.66 0.893719
Target:  5'- ---cGGCuCUCCGGCGGcuaucagcCCUCGACGGa -3'
miRNA:   3'- ucgaCUG-GAGGUCGCU--------GGAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 77608 0.66 0.893719
Target:  5'- gAGCUgGACCUCU-GCGGCCgcgCGG-AGCu -3'
miRNA:   3'- -UCGA-CUGGAGGuCGCUGGa--GCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 116777 0.66 0.893719
Target:  5'- cAGCgUGugCUCCAGCcGCUgggUGGCGAg -3'
miRNA:   3'- -UCG-ACugGAGGUCGcUGGa--GCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 39591 0.66 0.893719
Target:  5'- cGCUGcGCCUCU-GCcGCCagGACAACg -3'
miRNA:   3'- uCGAC-UGGAGGuCGcUGGagCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 107599 0.66 0.891702
Target:  5'- aAGCUGGCCccgCCGGCGccgccgcccgccaaGCCcguggaGACGACc -3'
miRNA:   3'- -UCGACUGGa--GGUCGC--------------UGGag----CUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 100338 0.66 0.886915
Target:  5'- gGGCacgUGGCgUCUGGCgGACgUCGugGACg -3'
miRNA:   3'- -UCG---ACUGgAGGUCG-CUGgAGCugUUG- -5'
29636 3' -56.1 NC_006151.1 + 68035 0.66 0.886915
Target:  5'- aGGC-GGCCcgCCGGCGcggcgggcacgGgCUCGGCGACg -3'
miRNA:   3'- -UCGaCUGGa-GGUCGC-----------UgGAGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 110966 0.66 0.886915
Target:  5'- gGGCgu-CCUCCAcgaucGCGugcGCCUCGGCcGCa -3'
miRNA:   3'- -UCGacuGGAGGU-----CGC---UGGAGCUGuUG- -5'
29636 3' -56.1 NC_006151.1 + 125646 0.66 0.879881
Target:  5'- gGGCgUGAUCgagggCCAGCucGGCgaCGACAACg -3'
miRNA:   3'- -UCG-ACUGGa----GGUCG--CUGgaGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 23505 0.66 0.879881
Target:  5'- aGGUUGGCCUCCAcCGACagggaGACggUg -3'
miRNA:   3'- -UCGACUGGAGGUcGCUGgag--CUGuuG- -5'
29636 3' -56.1 NC_006151.1 + 70782 0.66 0.879881
Target:  5'- cGCgcGCCUCCGGCaccggcguGGCCgUCGugGGCa -3'
miRNA:   3'- uCGacUGGAGGUCG--------CUGG-AGCugUUG- -5'
29636 3' -56.1 NC_006151.1 + 102048 0.66 0.879881
Target:  5'- gAGCUGGCC-CCGcuCGACCUgGGCccgcuGCa -3'
miRNA:   3'- -UCGACUGGaGGUc-GCUGGAgCUGu----UG- -5'
29636 3' -56.1 NC_006151.1 + 94866 0.66 0.879881
Target:  5'- cGCUG-CUcUCGGUGACCUgCGACGAg -3'
miRNA:   3'- uCGACuGGaGGUCGCUGGA-GCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 105294 0.66 0.879881
Target:  5'- cGC-GGCCgcgCCGGCG-CCUcCGAgGACg -3'
miRNA:   3'- uCGaCUGGa--GGUCGCuGGA-GCUgUUG- -5'
29636 3' -56.1 NC_006151.1 + 122964 0.66 0.872623
Target:  5'- gGGCgcgGACg-CCGGCGACgggggcgUCGGCGACg -3'
miRNA:   3'- -UCGa--CUGgaGGUCGCUGg------AGCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 55491 0.66 0.872623
Target:  5'- cGCgGACggCCAGCcgccgcggGACCUCGGCcACg -3'
miRNA:   3'- uCGaCUGgaGGUCG--------CUGGAGCUGuUG- -5'
29636 3' -56.1 NC_006151.1 + 52011 0.66 0.872623
Target:  5'- cAGCUugcGCCgcgCCAGCu-CCUCGGCGAa -3'
miRNA:   3'- -UCGAc--UGGa--GGUCGcuGGAGCUGUUg -5'
29636 3' -56.1 NC_006151.1 + 137221 0.66 0.872623
Target:  5'- cGGCUGGCCgugaCCAacauCGuCCUCGACGu- -3'
miRNA:   3'- -UCGACUGGa---GGUc---GCuGGAGCUGUug -5'
29636 3' -56.1 NC_006151.1 + 112038 0.66 0.872623
Target:  5'- gAGCUGGgg-CCGGCGGgCgggCGGCGGCg -3'
miRNA:   3'- -UCGACUggaGGUCGCUgGa--GCUGUUG- -5'
29636 3' -56.1 NC_006151.1 + 130688 0.66 0.865145
Target:  5'- cGGCgcagGAUgUCCGGgGGCC-CGACGGg -3'
miRNA:   3'- -UCGa---CUGgAGGUCgCUGGaGCUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.