miRNA display CGI


Results 41 - 60 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 126035 0.66 0.47523
Target:  5'- cGGcgaCGUGGGCgcCGCCGuCGGCaaggugGUCCu -3'
miRNA:   3'- uCCa--GCACCCGa-GCGGC-GCCGg-----CGGG- -5'
29636 5' -65.7 NC_006151.1 + 18692 0.66 0.474349
Target:  5'- cGGGcgCGcGGGCggCGCCgGCGucgugacGCCGUCCa -3'
miRNA:   3'- -UCCa-GCaCCCGa-GCGG-CGC-------CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 97334 0.66 0.47259
Target:  5'- cGGGUCGUugaacagguacgcgGGGaagGCCGCGGCgGCg- -3'
miRNA:   3'- -UCCAGCA--------------CCCgagCGGCGCCGgCGgg -5'
29636 5' -65.7 NC_006151.1 + 20623 0.66 0.466457
Target:  5'- gGGGUgGUGGGggCGCCcccuggGCGGCaccaggGCCg -3'
miRNA:   3'- -UCCAgCACCCgaGCGG------CGCCGg-----CGGg -5'
29636 5' -65.7 NC_006151.1 + 88721 0.66 0.466457
Target:  5'- cGGUCuc-GGCgucCGCCGCGGCCacGCgCa -3'
miRNA:   3'- uCCAGcacCCGa--GCGGCGCCGG--CGgG- -5'
29636 5' -65.7 NC_006151.1 + 95846 0.66 0.466457
Target:  5'- ---cCGUGGggcGCUCGCUGUcgcuguugauGGCCGCCg -3'
miRNA:   3'- uccaGCACC---CGAGCGGCG----------CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 122374 0.66 0.466457
Target:  5'- cGGGcUCGacgaGGCgCGCCGCGGgCGCgCg -3'
miRNA:   3'- -UCC-AGCac--CCGaGCGGCGCCgGCGgG- -5'
29636 5' -65.7 NC_006151.1 + 131576 0.66 0.466457
Target:  5'- -cGUCGcucaUGGuGgUCGCUGCGGCaaauGCCCc -3'
miRNA:   3'- ucCAGC----ACC-CgAGCGGCGCCGg---CGGG- -5'
29636 5' -65.7 NC_006151.1 + 132791 0.66 0.464713
Target:  5'- cAGGUCGcugaUGaGGCgcugguacagcgCGuCCGggcUGGCCGCCCg -3'
miRNA:   3'- -UCCAGC----AC-CCGa-----------GC-GGC---GCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 14668 0.66 0.457768
Target:  5'- cGGGUCGgcgucgGGGagcCUCGCCcacccaccCGGCC-CCCg -3'
miRNA:   3'- -UCCAGCa-----CCC---GAGCGGc-------GCCGGcGGG- -5'
29636 5' -65.7 NC_006151.1 + 33248 0.66 0.457768
Target:  5'- gGGGUCcgggggaaggGUgGGGCggugGCgGCGGCCaucGCCCg -3'
miRNA:   3'- -UCCAG----------CA-CCCGag--CGgCGCCGG---CGGG- -5'
29636 5' -65.7 NC_006151.1 + 79664 0.66 0.457768
Target:  5'- -cGUCGUGGGaccgccggaUCGUCGCcGCCGCg- -3'
miRNA:   3'- ucCAGCACCCg--------AGCGGCGcCGGCGgg -5'
29636 5' -65.7 NC_006151.1 + 3411 0.66 0.457768
Target:  5'- cGGcgUGUGGGuCUCGCCggccgggacgcgGCGgaaGCCGCCg -3'
miRNA:   3'- uCCa-GCACCC-GAGCGG------------CGC---CGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 65648 0.66 0.457768
Target:  5'- gAGGUCGaGGGUcgCGUacUGCaGGUCGUCCg -3'
miRNA:   3'- -UCCAGCaCCCGa-GCG--GCG-CCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 45279 0.66 0.457768
Target:  5'- -cGUCG-GGGUgaGCgGCGGUCGUCCc -3'
miRNA:   3'- ucCAGCaCCCGagCGgCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 109737 0.66 0.457768
Target:  5'- -cGcCGcUGGaGCggaUGCCGUGGCCGCCg -3'
miRNA:   3'- ucCaGC-ACC-CGa--GCGGCGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 57192 0.66 0.456041
Target:  5'- gGGGUCGUGGcGCgaggcgaaggccCGCuCGacgaGGCCGUCg -3'
miRNA:   3'- -UCCAGCACC-CGa-----------GCG-GCg---CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 15109 0.66 0.452597
Target:  5'- cGGGgccgaCGUGaaccgccucuuucgcGGCaUCGCCGUcucGGCCGCCg -3'
miRNA:   3'- -UCCa----GCAC---------------CCG-AGCGGCG---CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 37717 0.66 0.449167
Target:  5'- --aUCG-GGGa-CGCCaUGGCCGCCCa -3'
miRNA:   3'- uccAGCaCCCgaGCGGcGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 96109 0.66 0.449167
Target:  5'- gGGGUUGcGGGCacgaUCGCCugcGUGGCCaGCgCg -3'
miRNA:   3'- -UCCAGCaCCCG----AGCGG---CGCCGG-CGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.