miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 57512 0.66 0.493018
Target:  5'- cGGcCGc-GGCg-GCgGCGGCCGCCUc -3'
miRNA:   3'- uCCaGCacCCGagCGgCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 70622 0.66 0.493018
Target:  5'- cAGGagaUCcucGGCggCGCCGUGGCCGCgCg -3'
miRNA:   3'- -UCC---AGcacCCGa-GCGGCGCCGGCGgG- -5'
29636 5' -65.7 NC_006151.1 + 78177 0.66 0.493018
Target:  5'- gAGGcCGUGuccGC-CGUCGCGGCgGaCCCc -3'
miRNA:   3'- -UCCaGCACc--CGaGCGGCGCCGgC-GGG- -5'
29636 5' -65.7 NC_006151.1 + 109642 0.66 0.493018
Target:  5'- cGGG-CGagaGGaGC-CGCCGCuGCCGCCa -3'
miRNA:   3'- -UCCaGCa--CC-CGaGCGGCGcCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 16873 0.66 0.492122
Target:  5'- uGGuacaUCGcgGGGCgcgcucgcguccgUUGCCGCGcCCGCCCc -3'
miRNA:   3'- uCC----AGCa-CCCG-------------AGCGGCGCcGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 64355 0.66 0.49033
Target:  5'- cGGGcCGUcGGCcccccagcgcacggUCgagGCCGUGGCCaGCCCg -3'
miRNA:   3'- -UCCaGCAcCCG--------------AG---CGGCGCCGG-CGGG- -5'
29636 5' -65.7 NC_006151.1 + 81517 0.66 0.484085
Target:  5'- cGGcccgCGUGaGCUCggcgGCCGCGGCgGCgCg -3'
miRNA:   3'- uCCa---GCACcCGAG----CGGCGCCGgCGgG- -5'
29636 5' -65.7 NC_006151.1 + 81999 0.66 0.484085
Target:  5'- cGG-CGgccaGGGCg-GCCGCGugcGCCGCCg -3'
miRNA:   3'- uCCaGCa---CCCGagCGGCGC---CGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 86722 0.66 0.484085
Target:  5'- uGGUCGcGGcGCgcCGCCGCgaGGCCGgCg -3'
miRNA:   3'- uCCAGCaCC-CGa-GCGGCG--CCGGCgGg -5'
29636 5' -65.7 NC_006151.1 + 109253 0.66 0.484085
Target:  5'- cGGUCuccgcugGcGGCcccgaCGUCGCuGGCCGCCCc -3'
miRNA:   3'- uCCAGca-----C-CCGa----GCGGCG-CCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 124140 0.66 0.484085
Target:  5'- cGGUgGUGcGGCUggaGCCcgaGCaGGCCuGCCCc -3'
miRNA:   3'- uCCAgCAC-CCGAg--CGG---CG-CCGG-CGGG- -5'
29636 5' -65.7 NC_006151.1 + 128138 0.66 0.484085
Target:  5'- ---cCGUGGGCcCGCCGUacgaggccaGGCUGCgCg -3'
miRNA:   3'- uccaGCACCCGaGCGGCG---------CCGGCGgG- -5'
29636 5' -65.7 NC_006151.1 + 50332 0.66 0.484085
Target:  5'- cGGcCGcccGGcGcCUgGCCGCGGCCuCCCg -3'
miRNA:   3'- uCCaGCa--CC-C-GAgCGGCGCCGGcGGG- -5'
29636 5' -65.7 NC_006151.1 + 130714 0.66 0.484085
Target:  5'- gGGG-CGgcccggGGGCcCG-CGCGGCCGCg- -3'
miRNA:   3'- -UCCaGCa-----CCCGaGCgGCGCCGGCGgg -5'
29636 5' -65.7 NC_006151.1 + 66511 0.66 0.484085
Target:  5'- cGGaucuUCGccGGGCUCGCgCGCG-CCGCgCu -3'
miRNA:   3'- uCC----AGCa-CCCGAGCG-GCGCcGGCGgG- -5'
29636 5' -65.7 NC_006151.1 + 101577 0.66 0.478763
Target:  5'- -cGUCGcGGGCUaCGCCGCcagcgagcuccggugGGCCgggGCCUu -3'
miRNA:   3'- ucCAGCaCCCGA-GCGGCG---------------CCGG---CGGG- -5'
29636 5' -65.7 NC_006151.1 + 78535 0.66 0.47523
Target:  5'- cGG-CGgGGGcCUCGCCGCcgacgacgaaGCaCGCCCg -3'
miRNA:   3'- uCCaGCaCCC-GAGCGGCGc---------CG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 19262 0.66 0.47523
Target:  5'- uGGaagCG-GGGCUCGUgGCGcGCgggGCCCa -3'
miRNA:   3'- uCCa--GCaCCCGAGCGgCGC-CGg--CGGG- -5'
29636 5' -65.7 NC_006151.1 + 61924 0.66 0.47523
Target:  5'- cAGG-CG-GGuCUgGCCGCcGCCGCCUa -3'
miRNA:   3'- -UCCaGCaCCcGAgCGGCGcCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 99549 0.66 0.47523
Target:  5'- cGGagcaCGUGGGCgcggCGCgCGCGG-CGCUg -3'
miRNA:   3'- uCCa---GCACCCGa---GCG-GCGCCgGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.