miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 122775 0.73 0.185306
Target:  5'- cGGGcugcUCGUGGGCg-GCugCGCGGCCucGCCCg -3'
miRNA:   3'- -UCC----AGCACCCGagCG--GCGCCGG--CGGG- -5'
29636 5' -65.7 NC_006151.1 + 64504 0.73 0.185306
Target:  5'- cGGG-CGgcGGGCgcgCGCCGCcaaaGGCCGCCg -3'
miRNA:   3'- -UCCaGCa-CCCGa--GCGGCG----CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 6126 0.73 0.185306
Target:  5'- cGGccUCGU-GGCUCcgGCCGCGGCCGCg- -3'
miRNA:   3'- uCC--AGCAcCCGAG--CGGCGCCGGCGgg -5'
29636 5' -65.7 NC_006151.1 + 99242 0.72 0.194186
Target:  5'- cAGGUCGUGGaggcGCUCGugaCCGCGggcuucacgcGCCGCCa -3'
miRNA:   3'- -UCCAGCACC----CGAGC---GGCGC----------CGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 22088 0.72 0.203437
Target:  5'- cGGUaCGUGGGC-CGCCgGUGGgccaCCGCCUc -3'
miRNA:   3'- uCCA-GCACCCGaGCGG-CGCC----GGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 59564 0.72 0.208205
Target:  5'- -aGUCGgGGGCcagCGCCGCcagcuccaGCCGCCCg -3'
miRNA:   3'- ucCAGCaCCCGa--GCGGCGc-------CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 137860 0.72 0.208205
Target:  5'- cGGG-CGUguacgcgcacGGGCgcaGCCuGCGGCUGCCCu -3'
miRNA:   3'- -UCCaGCA----------CCCGag-CGG-CGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 58552 0.72 0.213068
Target:  5'- cGGUCGUcuccucUUCGCCGCcGCCGCCCg -3'
miRNA:   3'- uCCAGCAccc---GAGCGGCGcCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 139572 0.72 0.213068
Target:  5'- cGGUCcgcgagcgccUGGGCUCGCgcccccccgaGCGGCgGCCCg -3'
miRNA:   3'- uCCAGc---------ACCCGAGCGg---------CGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 64112 0.72 0.213068
Target:  5'- gAGGUCGU-GGCcCgGCgGUGGCgCGCCCg -3'
miRNA:   3'- -UCCAGCAcCCGaG-CGgCGCCG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 106365 0.72 0.218029
Target:  5'- uGGaCGcGGGCgcgcgccCGCCGCGGC-GCCCg -3'
miRNA:   3'- uCCaGCaCCCGa------GCGGCGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 139920 0.72 0.218029
Target:  5'- -cGcCGcGGGCUCGUCGCcgugGGCCGCCg -3'
miRNA:   3'- ucCaGCaCCCGAGCGGCG----CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 135921 0.72 0.218029
Target:  5'- cGGUCGUGcgcgcGCUCuGCCGCGGggaGCCCc -3'
miRNA:   3'- uCCAGCACc----CGAG-CGGCGCCgg-CGGG- -5'
29636 5' -65.7 NC_006151.1 + 136641 0.71 0.222578
Target:  5'- cGGcgccCGUGGggcGCUCGCCccucggggagcgcGCGGCCGCCg -3'
miRNA:   3'- uCCa---GCACC---CGAGCGG-------------CGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 130625 0.71 0.223088
Target:  5'- uGGUCGc-GGCUcacgagCGCCGCcgaGGCCGCCUg -3'
miRNA:   3'- uCCAGCacCCGA------GCGGCG---CCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 101974 0.71 0.223088
Target:  5'- cGGUCGgcGGGCggcCGUCGCGcaaguuCCGCCCg -3'
miRNA:   3'- uCCAGCa-CCCGa--GCGGCGCc-----GGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 90776 0.71 0.223088
Target:  5'- gGGGUCGgcGGGCgCGCagaagaagaagGUGGUCGCCCg -3'
miRNA:   3'- -UCCAGCa-CCCGaGCGg----------CGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 24953 0.71 0.223088
Target:  5'- cAGGUcCGUGacgauGCgCGCCGCGGCCuGCCg -3'
miRNA:   3'- -UCCA-GCACc----CGaGCGGCGCCGG-CGGg -5'
29636 5' -65.7 NC_006151.1 + 38278 0.71 0.223088
Target:  5'- uGGccgCGgcccGGCUCGCCGaGGCCGCCg -3'
miRNA:   3'- uCCa--GCac--CCGAGCGGCgCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 57589 0.71 0.233506
Target:  5'- uAGGcgcaCGUGaccaggccGGcCUCgGCCGCGGCCGCCUc -3'
miRNA:   3'- -UCCa---GCAC--------CC-GAG-CGGCGCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.