miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 125199 0.85 0.025834
Target:  5'- cGGcGUCGUGGGCcccgCGgcccCCGCGGCCGCCCg -3'
miRNA:   3'- -UC-CAGCACCCGa---GC----GGCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 76703 0.82 0.039937
Target:  5'- uGG-CGcGGGCgCGCCGCGGCCGCCUu -3'
miRNA:   3'- uCCaGCaCCCGaGCGGCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 61517 0.81 0.046534
Target:  5'- gAGGUCuGcGGGUUCGCCcUGGCCGCCCu -3'
miRNA:   3'- -UCCAG-CaCCCGAGCGGcGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 87435 0.78 0.085194
Target:  5'- uGGcCGUGcccgccGC-CGCCGCGGCCGCCCc -3'
miRNA:   3'- uCCaGCACc-----CGaGCGGCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 117260 0.77 0.087341
Target:  5'- gAGG-CGcGGGC-CGCgCGCGGCCGCCg -3'
miRNA:   3'- -UCCaGCaCCCGaGCG-GCGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 60202 0.77 0.101344
Target:  5'- cGGG-CGUgaagauGGGCUCGCCGCGcgcgccggaGCCGUCCa -3'
miRNA:   3'- -UCCaGCA------CCCGAGCGGCGC---------CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 117616 0.76 0.106465
Target:  5'- ---cCGUGGGCUCGCgCGCGaGCgUGCCCa -3'
miRNA:   3'- uccaGCACCCGAGCG-GCGC-CG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 85418 0.76 0.114604
Target:  5'- cGGGcuUCGUGGaCgaggucaaccgCGCCGCGGCCGCCUu -3'
miRNA:   3'- -UCC--AGCACCcGa----------GCGGCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 55066 0.75 0.123321
Target:  5'- gAGGaccCGgcGGGCUCgGCCGCGGCgCGCCUc -3'
miRNA:   3'- -UCCa--GCa-CCCGAG-CGGCGCCG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 122694 0.75 0.135902
Target:  5'- cGGcCGUGGaGCUCGCgcucuucggGCGGCgGCCCg -3'
miRNA:   3'- uCCaGCACC-CGAGCGg--------CGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 130953 0.75 0.139226
Target:  5'- gGGGUCGcgcGGGCgcggggGCCGguacccCGGCCGCCCg -3'
miRNA:   3'- -UCCAGCa--CCCGag----CGGC------GCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 110154 0.74 0.155871
Target:  5'- cGGacUCG-GGGCccuggcccugcucaUCGCCGCGuGCCGCCUg -3'
miRNA:   3'- uCC--AGCaCCCG--------------AGCGGCGC-CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 89739 0.74 0.156993
Target:  5'- cGGUgGUGGGCgagacgagcuggUUGCCGCGGCC-CaCCa -3'
miRNA:   3'- uCCAgCACCCG------------AGCGGCGCCGGcG-GG- -5'
29636 5' -65.7 NC_006151.1 + 105273 0.74 0.156993
Target:  5'- uGGGagGacuuUGGGCgCGCgCGCGGCCGCgCCg -3'
miRNA:   3'- -UCCagC----ACCCGaGCG-GCGCCGGCG-GG- -5'
29636 5' -65.7 NC_006151.1 + 58844 0.73 0.168615
Target:  5'- cAGGUgcgccagcgCGUGGaGCUCGCC-CGGCgCGCCg -3'
miRNA:   3'- -UCCA---------GCACC-CGAGCGGcGCCG-GCGGg -5'
29636 5' -65.7 NC_006151.1 + 11816 0.73 0.168615
Target:  5'- gGGGUgGgGGGCg-GCgGCGGCuCGCCCu -3'
miRNA:   3'- -UCCAgCaCCCGagCGgCGCCG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 57979 0.73 0.168615
Target:  5'- ----gGUGGGCggcgagcgCGCCGCGGaCCGCCUc -3'
miRNA:   3'- uccagCACCCGa-------GCGGCGCC-GGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 89577 0.73 0.176785
Target:  5'- uGGGcaCGcccaUGGGCUCGCCgGCGGCCGUg- -3'
miRNA:   3'- -UCCa-GC----ACCCGAGCGG-CGCCGGCGgg -5'
29636 5' -65.7 NC_006151.1 + 138730 0.73 0.176785
Target:  5'- cGGGUCGUGuacGCgCGCCGCGacuGCCGCgCCu -3'
miRNA:   3'- -UCCAGCACc--CGaGCGGCGC---CGGCG-GG- -5'
29636 5' -65.7 NC_006151.1 + 119037 0.73 0.176785
Target:  5'- cGGG-CGccaaggacGGCggCGCCGCGGCCGCCUc -3'
miRNA:   3'- -UCCaGCac------CCGa-GCGGCGCCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.