miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 732 0.68 0.346242
Target:  5'- cGGG-CGgGGGCUUccgcuCCGCGGC-GCCCg -3'
miRNA:   3'- -UCCaGCaCCCGAGc----GGCGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 2110 0.67 0.440655
Target:  5'- cGGGcCGcgGGGCcggccgucgcCGCCGCGGaCGCCg -3'
miRNA:   3'- -UCCaGCa-CCCGa---------GCGGCGCCgGCGGg -5'
29636 5' -65.7 NC_006151.1 + 2280 0.7 0.273215
Target:  5'- cGGcCGgcgGGGCgccCGCgGCGGCgacggCGCCCg -3'
miRNA:   3'- uCCaGCa--CCCGa--GCGgCGCCG-----GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 2624 0.68 0.383776
Target:  5'- gGGGUcCG-GGGCcCGgCGCGGgUGCUCa -3'
miRNA:   3'- -UCCA-GCaCCCGaGCgGCGCCgGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 3075 0.71 0.256141
Target:  5'- gAGG-CgGUGGGCgaaggcggcgagcagCGCCGagaGGCCGCCg -3'
miRNA:   3'- -UCCaG-CACCCGa--------------GCGGCg--CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 3411 0.66 0.457768
Target:  5'- cGGcgUGUGGGuCUCGCCggccgggacgcgGCGgaaGCCGCCg -3'
miRNA:   3'- uCCa-GCACCC-GAGCGG------------CGC---CGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 3608 0.69 0.311412
Target:  5'- -cGUCGUcGcGGUg-GCCGUGGCCGUCCc -3'
miRNA:   3'- ucCAGCA-C-CCGagCGGCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 3861 0.67 0.407555
Target:  5'- gAGGcCGgaggGGGCgccCGCCGCcGCCgGCgCCg -3'
miRNA:   3'- -UCCaGCa---CCCGa--GCGGCGcCGG-CG-GG- -5'
29636 5' -65.7 NC_006151.1 + 3944 0.67 0.432236
Target:  5'- cGGG-CGcGGGCUcCGCgggcccgggccgCGCGGCgGCCUc -3'
miRNA:   3'- -UCCaGCaCCCGA-GCG------------GCGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 4464 0.67 0.407555
Target:  5'- aAGGUCuucUGGGUgcgaUCGuaGCGGCgGCUCa -3'
miRNA:   3'- -UCCAGc--ACCCG----AGCggCGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 5013 0.66 0.493018
Target:  5'- gGGGcCGggcGGGCUCcgggGCCGgGGCCggggagGCCg -3'
miRNA:   3'- -UCCaGCa--CCCGAG----CGGCgCCGG------CGGg -5'
29636 5' -65.7 NC_006151.1 + 5079 0.7 0.267226
Target:  5'- aGGGcCGcgGGGC-CGCgGCGGgCGCCg -3'
miRNA:   3'- -UCCaGCa-CCCGaGCGgCGCCgGCGGg -5'
29636 5' -65.7 NC_006151.1 + 5616 0.67 0.399526
Target:  5'- cGG-CGgaGGGggCGCCGCcGCCGCCg -3'
miRNA:   3'- uCCaGCa-CCCgaGCGGCGcCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 5738 0.66 0.493018
Target:  5'- gGGGUCcgaGGCcgCGCCGcCGGCCcggGCUCa -3'
miRNA:   3'- -UCCAGcacCCGa-GCGGC-GCCGG---CGGG- -5'
29636 5' -65.7 NC_006151.1 + 6126 0.73 0.185306
Target:  5'- cGGccUCGU-GGCUCcgGCCGCGGCCGCg- -3'
miRNA:   3'- uCC--AGCAcCCGAG--CGGCGCCGGCGgg -5'
29636 5' -65.7 NC_006151.1 + 7231 0.67 0.43812
Target:  5'- cGGGgaagcuucCGUGuGcacgucauuugcauGCUCGCCccacGUGGCCGCCCu -3'
miRNA:   3'- -UCCa-------GCAC-C--------------CGAGCGG----CGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 8984 0.7 0.267226
Target:  5'- aGGGUCGggcgauGGC-CGCCGCcaCCGCCCc -3'
miRNA:   3'- -UCCAGCac----CCGaGCGGCGccGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 10196 0.66 0.449167
Target:  5'- cGGUCGcGGcGCggGCgGCGGCUGCa- -3'
miRNA:   3'- uCCAGCaCC-CGagCGgCGCCGGCGgg -5'
29636 5' -65.7 NC_006151.1 + 11816 0.73 0.168615
Target:  5'- gGGGUgGgGGGCg-GCgGCGGCuCGCCCu -3'
miRNA:   3'- -UCCAgCaCCCGagCGgCGCCG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 11908 0.67 0.399526
Target:  5'- -cGUCG-GGGUUuucgcgcccucgCGCCGCcGCCGCCUc -3'
miRNA:   3'- ucCAGCaCCCGA------------GCGGCGcCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.