miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 141622 0.67 0.423912
Target:  5'- cGGGaUCGggcGGGUcgcUGCCGCGGCgGCgCg -3'
miRNA:   3'- -UCC-AGCa--CCCGa--GCGGCGCCGgCGgG- -5'
29636 5' -65.7 NC_006151.1 + 141290 0.69 0.331983
Target:  5'- cGGUCcgaugacgGUGGGCUCGUaCGCGGgCggGUCCg -3'
miRNA:   3'- uCCAG--------CACCCGAGCG-GCGCCgG--CGGG- -5'
29636 5' -65.7 NC_006151.1 + 140370 0.68 0.368442
Target:  5'- -cGUCGUcgagcGcGGCUCgaGCUGCGuGCUGCCCg -3'
miRNA:   3'- ucCAGCA-----C-CCGAG--CGGCGC-CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 139920 0.72 0.218029
Target:  5'- -cGcCGcGGGCUCGUCGCcgugGGCCGCCg -3'
miRNA:   3'- ucCaGCaCCCGAGCGGCG----CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 139646 0.7 0.27931
Target:  5'- cGG-CGcgGGGgUCGCgGCGggcgcGCCGCCCg -3'
miRNA:   3'- uCCaGCa-CCCgAGCGgCGC-----CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 139572 0.72 0.213068
Target:  5'- cGGUCcgcgagcgccUGGGCUCGCgcccccccgaGCGGCgGCCCg -3'
miRNA:   3'- uCCAGc---------ACCCGAGCGg---------CGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 138730 0.73 0.176785
Target:  5'- cGGGUCGUGuacGCgCGCCGCGacuGCCGCgCCu -3'
miRNA:   3'- -UCCAGCACc--CGaGCGGCGC---CGGCG-GG- -5'
29636 5' -65.7 NC_006151.1 + 137860 0.72 0.208205
Target:  5'- cGGG-CGUguacgcgcacGGGCgcaGCCuGCGGCUGCCCu -3'
miRNA:   3'- -UCCaGCA----------CCCGag-CGG-CGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 136830 0.7 0.298245
Target:  5'- ---gCGcGGGCUCuGCgaCGCGGCCGCCg -3'
miRNA:   3'- uccaGCaCCCGAG-CG--GCGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 136641 0.71 0.222578
Target:  5'- cGGcgccCGUGGggcGCUCGCCccucggggagcgcGCGGCCGCCg -3'
miRNA:   3'- uCCa---GCACC---CGAGCGG-------------CGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 135921 0.72 0.218029
Target:  5'- cGGUCGUGcgcgcGCUCuGCCGCGGggaGCCCc -3'
miRNA:   3'- uCCAGCACc----CGAG-CGGCGCCgg-CGGG- -5'
29636 5' -65.7 NC_006151.1 + 134767 0.7 0.296308
Target:  5'- cGGGgcccgCGgcuucGGCUCcacgggccugugagGCCGCGGCgGCCCg -3'
miRNA:   3'- -UCCa----GCac---CCGAG--------------CGGCGCCGgCGGG- -5'
29636 5' -65.7 NC_006151.1 + 133653 0.68 0.391599
Target:  5'- cGGGUgCGaGaGGCgcugccggCGCgGCGGCgCGCCCc -3'
miRNA:   3'- -UCCA-GCaC-CCGa-------GCGgCGCCG-GCGGG- -5'
29636 5' -65.7 NC_006151.1 + 133614 0.66 0.449167
Target:  5'- gAGGggCGUcugGGGgUCGCgGCGGCCGg-- -3'
miRNA:   3'- -UCCa-GCA---CCCgAGCGgCGCCGGCggg -5'
29636 5' -65.7 NC_006151.1 + 133167 0.67 0.415684
Target:  5'- cGGG-CGUGGGcCUCGgccacgcgucCCaCGGCCGCgCa -3'
miRNA:   3'- -UCCaGCACCC-GAGC----------GGcGCCGGCGgG- -5'
29636 5' -65.7 NC_006151.1 + 132791 0.66 0.464713
Target:  5'- cAGGUCGcugaUGaGGCgcugguacagcgCGuCCGggcUGGCCGCCCg -3'
miRNA:   3'- -UCCAGC----AC-CCGa-----------GC-GGC---GCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 131576 0.66 0.466457
Target:  5'- -cGUCGcucaUGGuGgUCGCUGCGGCaaauGCCCc -3'
miRNA:   3'- ucCAGC----ACC-CgAGCGGCGCCGg---CGGG- -5'
29636 5' -65.7 NC_006151.1 + 131123 0.69 0.304774
Target:  5'- cGG-CGcGGGaggccgcggCGCCGCGGCCGUCa -3'
miRNA:   3'- uCCaGCaCCCga-------GCGGCGCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 130953 0.75 0.139226
Target:  5'- gGGGUCGcgcGGGCgcggggGCCGguacccCGGCCGCCCg -3'
miRNA:   3'- -UCCAGCa--CCCGag----CGGC------GCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 130714 0.66 0.484085
Target:  5'- gGGG-CGgcccggGGGCcCG-CGCGGCCGCg- -3'
miRNA:   3'- -UCCaGCa-----CCCGaGCgGCGCCGGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.