miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29636 5' -65.7 NC_006151.1 + 12278 0.69 0.31816
Target:  5'- cAGGcCGcGGGCccauucaccaUCGCCGCGGUCcgaGCUCg -3'
miRNA:   3'- -UCCaGCaCCCG----------AGCGGCGCCGG---CGGG- -5'
29636 5' -65.7 NC_006151.1 + 13156 0.7 0.289288
Target:  5'- cGGUCccggaaauuuccGGGacggUCGCCGCGGCCGUCUc -3'
miRNA:   3'- uCCAGca----------CCCg---AGCGGCGCCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 14668 0.66 0.457768
Target:  5'- cGGGUCGgcgucgGGGagcCUCGCCcacccaccCGGCC-CCCg -3'
miRNA:   3'- -UCCAGCa-----CCC---GAGCGGc-------GCCGGcGGG- -5'
29636 5' -65.7 NC_006151.1 + 15109 0.66 0.452597
Target:  5'- cGGGgccgaCGUGaaccgccucuuucgcGGCaUCGCCGUcucGGCCGCCg -3'
miRNA:   3'- -UCCa----GCAC---------------CCG-AGCGGCG---CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 16873 0.66 0.492122
Target:  5'- uGGuacaUCGcgGGGCgcgcucgcguccgUUGCCGCGcCCGCCCc -3'
miRNA:   3'- uCC----AGCa-CCCG-------------AGCGGCGCcGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 18423 0.68 0.368442
Target:  5'- gGGGagGaGGGC-CGCCgGCGGgcgUCGCCCg -3'
miRNA:   3'- -UCCagCaCCCGaGCGG-CGCC---GGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 18692 0.66 0.474349
Target:  5'- cGGGcgCGcGGGCggCGCCgGCGucgugacGCCGUCCa -3'
miRNA:   3'- -UCCa-GCaCCCGa-GCGG-CGC-------CGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 18765 0.66 0.502026
Target:  5'- gGGGUgccCG-GGGCccggGCCGgGGCCGUCa -3'
miRNA:   3'- -UCCA---GCaCCCGag--CGGCgCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 19262 0.66 0.47523
Target:  5'- uGGaagCG-GGGCUCGUgGCGcGCgggGCCCa -3'
miRNA:   3'- uCCa--GCaCCCGAGCGgCGC-CGg--CGGG- -5'
29636 5' -65.7 NC_006151.1 + 20128 0.68 0.366179
Target:  5'- gGGGcUGggGGGCgggCGCCGCGGgggcggcgcguggaCCGCCg -3'
miRNA:   3'- -UCCaGCa-CCCGa--GCGGCGCC--------------GGCGGg -5'
29636 5' -65.7 NC_006151.1 + 20387 0.71 0.24433
Target:  5'- aGGGUCccGGGCaccggggucaUCGCCGUcGUCGCCCc -3'
miRNA:   3'- -UCCAGcaCCCG----------AGCGGCGcCGGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 20623 0.66 0.466457
Target:  5'- gGGGUgGUGGGggCGCCcccuggGCGGCaccaggGCCg -3'
miRNA:   3'- -UCCAgCACCCgaGCGG------CGCCGg-----CGGg -5'
29636 5' -65.7 NC_006151.1 + 22088 0.72 0.203437
Target:  5'- cGGUaCGUGGGC-CGCCgGUGGgccaCCGCCUc -3'
miRNA:   3'- uCCA-GCACCCGaGCGG-CGCC----GGCGGG- -5'
29636 5' -65.7 NC_006151.1 + 23023 0.69 0.310744
Target:  5'- gGGGUgGUGGaggcggcgaagaaGCgggCgGCCGCGGCgaGCCCa -3'
miRNA:   3'- -UCCAgCACC-------------CGa--G-CGGCGCCGg-CGGG- -5'
29636 5' -65.7 NC_006151.1 + 23253 0.67 0.415684
Target:  5'- gGGGccUCGgGGGCaUCGCCGUGGaCGaCCUc -3'
miRNA:   3'- -UCC--AGCaCCCG-AGCGGCGCCgGC-GGG- -5'
29636 5' -65.7 NC_006151.1 + 23911 0.7 0.285513
Target:  5'- cGGUCGcGGGCcCGaCG-GGCCGCCg -3'
miRNA:   3'- uCCAGCaCCCGaGCgGCgCCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 24953 0.71 0.223088
Target:  5'- cAGGUcCGUGacgauGCgCGCCGCGGCCuGCCg -3'
miRNA:   3'- -UCCA-GCACc----CGaGCGGCGCCGG-CGGg -5'
29636 5' -65.7 NC_006151.1 + 28169 0.69 0.331983
Target:  5'- cGGcGUCGUugGGGCggcgagUGCCGUcggccgGGCCGCCa -3'
miRNA:   3'- -UC-CAGCA--CCCGa-----GCGGCG------CCGGCGGg -5'
29636 5' -65.7 NC_006151.1 + 29216 0.67 0.440655
Target:  5'- gGGGUgGggaUGGGUcacCGCCGgguCGGCCGCgCCc -3'
miRNA:   3'- -UCCAgC---ACCCGa--GCGGC---GCCGGCG-GG- -5'
29636 5' -65.7 NC_006151.1 + 30430 0.71 0.238867
Target:  5'- gAGGaCGgaGGGCgaGCCGCcGCCGCCCc -3'
miRNA:   3'- -UCCaGCa-CCCGagCGGCGcCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.