miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 46981 0.66 0.599883
Target:  5'- gGCCGCcgCCGCUCCUgcccccacuUCGGCucCCg- -3'
miRNA:   3'- -CGGUGuaGGCGAGGG---------AGCCGccGGag -5'
29638 3' -62.1 NC_006151.1 + 48643 0.67 0.545304
Target:  5'- cGCCACcgCCGCUgcagcagcagccCCCgccggggcaggggcCGG-GGCCUCg -3'
miRNA:   3'- -CGGUGuaGGCGA------------GGGa-------------GCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 49952 0.68 0.522381
Target:  5'- aCCugG-CCGCggCCCU-GGcCGGCCUCc -3'
miRNA:   3'- cGGugUaGGCGa-GGGAgCC-GCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 50834 0.79 0.112229
Target:  5'- gGCCcgcGCcgCCGUcCCCUCGGCGGCCg- -3'
miRNA:   3'- -CGG---UGuaGGCGaGGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 51277 0.71 0.343265
Target:  5'- aUCACGagCGCgCCCUCGGgGGCCg- -3'
miRNA:   3'- cGGUGUagGCGaGGGAGCCgCCGGag -5'
29638 3' -62.1 NC_006151.1 + 52018 0.68 0.494272
Target:  5'- cGCCGCG-CCaGCU-CCUCGGCgaaGGCCg- -3'
miRNA:   3'- -CGGUGUaGG-CGAgGGAGCCG---CCGGag -5'
29638 3' -62.1 NC_006151.1 + 52449 0.66 0.619599
Target:  5'- cGCCGCcgCCGUga---CGGCGGCCa- -3'
miRNA:   3'- -CGGUGuaGGCGagggaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 53625 0.68 0.497981
Target:  5'- aCCAgGUCgCGCUUCUgcagcucgcgcaccgUCGGCGGgCUCg -3'
miRNA:   3'- cGGUgUAG-GCGAGGG---------------AGCCGCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 54103 0.68 0.503568
Target:  5'- gGCCAUGUCgGCUgCgaCGGCGGCg-- -3'
miRNA:   3'- -CGGUGUAGgCGAgGgaGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 56105 0.68 0.485055
Target:  5'- aCCGCcgCCGCUgCCUCGccggggaGGCCUUc -3'
miRNA:   3'- cGGUGuaGGCGAgGGAGCcg-----CCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 57249 0.83 0.059026
Target:  5'- gGCCucgGCGUCCGCgcggCCCUCGaCGGCCUCg -3'
miRNA:   3'- -CGG---UGUAGGCGa---GGGAGCcGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 57341 0.68 0.475921
Target:  5'- aGCCGacaaaGUCCGCggggCCCUCGcGCcGCCg- -3'
miRNA:   3'- -CGGUg----UAGGCGa---GGGAGC-CGcCGGag -5'
29638 3' -62.1 NC_006151.1 + 57435 0.67 0.570489
Target:  5'- cGUCACGUCCGUcg---CGGCGGCCc- -3'
miRNA:   3'- -CGGUGUAGGCGagggaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 57465 0.77 0.144188
Target:  5'- gGCCAgGUgCCGCgCCg-CGGCGGCCUCg -3'
miRNA:   3'- -CGGUgUA-GGCGaGGgaGCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 58906 0.68 0.512939
Target:  5'- gGCCGCGcacaCgCGCUCCCcCGccGCGGCCgUCa -3'
miRNA:   3'- -CGGUGUa---G-GCGAGGGaGC--CGCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 58944 0.69 0.44028
Target:  5'- cGCCGCAaagUCCacgGCcCCCUCGGUGcgcggccacGCCUCc -3'
miRNA:   3'- -CGGUGU---AGG---CGaGGGAGCCGC---------CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 59473 0.7 0.381765
Target:  5'- uCCACcUCCgGCgaggcgCCCUcgaagagccCGGCGGCCUCc -3'
miRNA:   3'- cGGUGuAGG-CGa-----GGGA---------GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 60659 0.69 0.466873
Target:  5'- cGCCGCGUCCucGCUCCCgUCGccGCcGCCg- -3'
miRNA:   3'- -CGGUGUAGG--CGAGGG-AGC--CGcCGGag -5'
29638 3' -62.1 NC_006151.1 + 62008 0.67 0.531889
Target:  5'- gGUgACGUgCGCgccgCCCU-GGCGGCCa- -3'
miRNA:   3'- -CGgUGUAgGCGa---GGGAgCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 63737 0.66 0.629474
Target:  5'- cGCCACAccUCCgGCg-CgUCGGCGGggcguCCUCg -3'
miRNA:   3'- -CGGUGU--AGG-CGagGgAGCCGCC-----GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.