Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 26363 | 0.68 | 0.503568 |
Target: 5'- gGCCGCGUCggggcgCGCgUCCCcCGGCGGgCg- -3' miRNA: 3'- -CGGUGUAG------GCG-AGGGaGCCGCCgGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 26574 | 0.66 | 0.619599 |
Target: 5'- aGCCcucucCGUCCGagccgUCCUCGGgGGgCUCa -3' miRNA: 3'- -CGGu----GUAGGCga---GGGAGCCgCCgGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 31019 | 0.72 | 0.314535 |
Target: 5'- gGUCGCcgCCGCggCCCUCG-CGGCC-Cg -3' miRNA: 3'- -CGGUGuaGGCGa-GGGAGCcGCCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 31210 | 0.66 | 0.629474 |
Target: 5'- cCCGCGUCCagGCcgggCCCcCGGCcGGCCg- -3' miRNA: 3'- cGGUGUAGG--CGa---GGGaGCCG-CCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 31807 | 0.74 | 0.217899 |
Target: 5'- cGCCGCGUCCuccuccucCUCCCUCcccGcCGGCCUCg -3' miRNA: 3'- -CGGUGUAGGc-------GAGGGAGc--C-GCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 35580 | 0.7 | 0.406207 |
Target: 5'- gGCCAUugGUCCGCUUaCCUgggGGCGGgCUCu -3' miRNA: 3'- -CGGUG--UAGGCGAG-GGAg--CCGCCgGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 35853 | 0.74 | 0.239391 |
Target: 5'- cGCCGC--CCGCUCUccgcgCUCGGCgcccGGCCUCg -3' miRNA: 3'- -CGGUGuaGGCGAGG-----GAGCCG----CCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 36002 | 0.66 | 0.639351 |
Target: 5'- aUCGCGUCCgGC-CCCgaCGGCGGCa-- -3' miRNA: 3'- cGGUGUAGG-CGaGGGa-GCCGCCGgag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 36041 | 0.68 | 0.493347 |
Target: 5'- cGCCGCGgcuccUCCGgcgaggauCUCCuCUUcggcccgGGCGGCCUCu -3' miRNA: 3'- -CGGUGU-----AGGC--------GAGG-GAG-------CCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 36376 | 0.67 | 0.580255 |
Target: 5'- aGCgGCAgaggCCGgggCCCcCGGCGGCCcCg -3' miRNA: 3'- -CGgUGUa---GGCga-GGGaGCCGCCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 37023 | 0.69 | 0.449049 |
Target: 5'- cGCCGCcgCCGCgcggCgCUCGGCcuCCUCc -3' miRNA: 3'- -CGGUGuaGGCGa---GgGAGCCGccGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 37182 | 0.76 | 0.179848 |
Target: 5'- cGCCGCGgccCCGCggCCCUCGGCcuccuccGCCUCc -3' miRNA: 3'- -CGGUGUa--GGCGa-GGGAGCCGc------CGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 37393 | 0.71 | 0.328668 |
Target: 5'- gGCCGCGUCCGCUa---CGGCGGCg-- -3' miRNA: 3'- -CGGUGUAGGCGAgggaGCCGCCGgag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 38691 | 0.72 | 0.28766 |
Target: 5'- cGgCGCAagcgCCGCUCCCUCGGacucgGGCC-Cg -3' miRNA: 3'- -CgGUGUa---GGCGAGGGAGCCg----CCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 38806 | 0.69 | 0.423037 |
Target: 5'- uGCCcgaGCAccCCGCgCCCgaCGGCGGCUUCc -3' miRNA: 3'- -CGG---UGUa-GGCGaGGGa-GCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 38860 | 0.75 | 0.184261 |
Target: 5'- cCCACAcgCCGCggCCCUCcgaGGCGGcCCUCg -3' miRNA: 3'- cGGUGUa-GGCGa-GGGAG---CCGCC-GGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 39145 | 0.74 | 0.223112 |
Target: 5'- gGCCugGgacCCGCgCCg-CGGCGGCCUCu -3' miRNA: 3'- -CGGugUa--GGCGaGGgaGCCGCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 40041 | 0.67 | 0.576344 |
Target: 5'- cGCCGCcgggggcgCCGUggagacccaccggCCCgCGGgGGCCUCg -3' miRNA: 3'- -CGGUGua------GGCGa------------GGGaGCCgCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 40238 | 0.7 | 0.389803 |
Target: 5'- uGCUGC-UCCGCUgagcggggcgccCCCUCGGCccGGCCg- -3' miRNA: 3'- -CGGUGuAGGCGA------------GGGAGCCG--CCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 40403 | 0.73 | 0.245034 |
Target: 5'- uCUGCGUCCGCgg---CGGCGGCCUCg -3' miRNA: 3'- cGGUGUAGGCGagggaGCCGCCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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