miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 15917 0.73 0.25665
Target:  5'- cCCGCcgCCGC-CCCgugaGGCGGgCCUCg -3'
miRNA:   3'- cGGUGuaGGCGaGGGag--CCGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 1 0.73 0.262625
Target:  5'- cCCACcccCCGCUCCC-CGGgGGCCg- -3'
miRNA:   3'- cGGUGua-GGCGAGGGaGCCgCCGGag -5'
29638 3' -62.1 NC_006151.1 + 120870 0.73 0.262625
Target:  5'- aGCCACcugcUCCGCUCCgUCa-UGGCCUCg -3'
miRNA:   3'- -CGGUGu---AGGCGAGGgAGccGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 38691 0.72 0.28766
Target:  5'- cGgCGCAagcgCCGCUCCCUCGGacucgGGCC-Cg -3'
miRNA:   3'- -CgGUGUa---GGCGAGGGAGCCg----CCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 10511 0.72 0.28766
Target:  5'- cGCCGCAggCGCgUCCC-CGGCGcgggcGCCUCu -3'
miRNA:   3'- -CGGUGUagGCG-AGGGaGCCGC-----CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 2403 0.72 0.307642
Target:  5'- gGCCGCGgagcUCgGCgaggCCC-CGGCGGCCg- -3'
miRNA:   3'- -CGGUGU----AGgCGa---GGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 3113 0.72 0.309698
Target:  5'- cGCCGCggcgcggGUCCcaggccgggcgcgggGCgCCCUCGGCGGgCUCg -3'
miRNA:   3'- -CGGUG-------UAGG---------------CGaGGGAGCCGCCgGAG- -5'
29638 3' -62.1 NC_006151.1 + 103253 0.72 0.314535
Target:  5'- cGgCACAUCCGCgCCaUgGGCGGCCa- -3'
miRNA:   3'- -CgGUGUAGGCGaGGgAgCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 31019 0.72 0.314535
Target:  5'- gGUCGCcgCCGCggCCCUCG-CGGCC-Cg -3'
miRNA:   3'- -CGGUGuaGGCGa-GGGAGCcGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 37393 0.71 0.328668
Target:  5'- gGCCGCGUCCGCUa---CGGCGGCg-- -3'
miRNA:   3'- -CGGUGUAGGCGAgggaGCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 108567 0.71 0.335909
Target:  5'- cCCGCGUCCGCguccUCCUCcGCcGCCUCg -3'
miRNA:   3'- cGGUGUAGGCGa---GGGAGcCGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 51277 0.71 0.343265
Target:  5'- aUCACGagCGCgCCCUCGGgGGCCg- -3'
miRNA:   3'- cGGUGUagGCGaGGGAGCCgCCGGag -5'
29638 3' -62.1 NC_006151.1 + 129188 0.71 0.350737
Target:  5'- cGCCACggCCGCcgucagcaccUCCC-CGGgGGCCg- -3'
miRNA:   3'- -CGGUGuaGGCG----------AGGGaGCCgCCGGag -5'
29638 3' -62.1 NC_006151.1 + 119573 0.71 0.366024
Target:  5'- cGCCA---CCGCUCCCgcgcuUCGGCGcGCCg- -3'
miRNA:   3'- -CGGUguaGGCGAGGG-----AGCCGC-CGGag -5'
29638 3' -62.1 NC_006151.1 + 135227 0.71 0.366024
Target:  5'- gGCCACGUCggacaucaccaCGUUgCUCUCGGCGGUCa- -3'
miRNA:   3'- -CGGUGUAG-----------GCGA-GGGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 8304 0.7 0.372266
Target:  5'- cGCCGCGUcCCGC-CCCgagcccccggggCGcGCGGgCCUCg -3'
miRNA:   3'- -CGGUGUA-GGCGaGGGa-----------GC-CGCC-GGAG- -5'
29638 3' -62.1 NC_006151.1 + 135901 0.7 0.373838
Target:  5'- cGUCGCcgCCGCgaCCC-CGGCGGUCg- -3'
miRNA:   3'- -CGGUGuaGGCGa-GGGaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 96198 0.7 0.373838
Target:  5'- cGCCAUGgggcgCCGCgUCgCCguggCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUa----GGCG-AG-GGa---GCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 9468 0.7 0.381765
Target:  5'- uCCGCGUCCGCUucggCCCcCcGCGGCCg- -3'
miRNA:   3'- cGGUGUAGGCGA----GGGaGcCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 59473 0.7 0.381765
Target:  5'- uCCACcUCCgGCgaggcgCCCUcgaagagccCGGCGGCCUCc -3'
miRNA:   3'- cGGUGuAGG-CGa-----GGGA---------GCCGCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.