miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29638 3' -62.1 NC_006151.1 + 89025 0.66 0.609733
Target:  5'- aGCCGCucccggcacacgAUgCGCUugcgCCCgugcgCGGUGGCCUUg -3'
miRNA:   3'- -CGGUG------------UAgGCGA----GGGa----GCCGCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 46981 0.66 0.599883
Target:  5'- gGCCGCcgCCGCUCCUgcccccacuUCGGCucCCg- -3'
miRNA:   3'- -CGGUGuaGGCGAGGG---------AGCCGccGGag -5'
29638 3' -62.1 NC_006151.1 + 6949 0.66 0.599883
Target:  5'- cGCCAUcUUgGC-CCCUCGaCGGCCa- -3'
miRNA:   3'- -CGGUGuAGgCGaGGGAGCcGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 11363 0.66 0.599883
Target:  5'- cGCUACcgCgCGCUCCgCUCG-CcGCCUCu -3'
miRNA:   3'- -CGGUGuaG-GCGAGG-GAGCcGcCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 124930 0.66 0.599883
Target:  5'- uUCACGUCgCGggCCCUgGGCG-CCUCc -3'
miRNA:   3'- cGGUGUAG-GCgaGGGAgCCGCcGGAG- -5'
29638 3' -62.1 NC_006151.1 + 24868 0.66 0.590055
Target:  5'- aCCACcguGUCCGCcucgCCCggcCGGCgGGCCa- -3'
miRNA:   3'- cGGUG---UAGGCGa---GGGa--GCCG-CCGGag -5'
29638 3' -62.1 NC_006151.1 + 87192 0.66 0.590055
Target:  5'- cGCCGCAgCUGCUgCCgccCGG-GGCCgUCg -3'
miRNA:   3'- -CGGUGUaGGCGAgGGa--GCCgCCGG-AG- -5'
29638 3' -62.1 NC_006151.1 + 109245 0.67 0.580255
Target:  5'- aGCCGCcgCgGuCUCCgCU-GGCGGCCcCg -3'
miRNA:   3'- -CGGUGuaGgC-GAGG-GAgCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 36376 0.67 0.580255
Target:  5'- aGCgGCAgaggCCGgggCCCcCGGCGGCCcCg -3'
miRNA:   3'- -CGgUGUa---GGCga-GGGaGCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 40041 0.67 0.576344
Target:  5'- cGCCGCcgggggcgCCGUggagacccaccggCCCgCGGgGGCCUCg -3'
miRNA:   3'- -CGGUGua------GGCGa------------GGGaGCCgCCGGAG- -5'
29638 3' -62.1 NC_006151.1 + 57435 0.67 0.570489
Target:  5'- cGUCACGUCCGUcg---CGGCGGCCc- -3'
miRNA:   3'- -CGGUGUAGGCGagggaGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 113432 0.67 0.570489
Target:  5'- cGCUGCG-CCGCUUCCggcgCGGCGuGCUc- -3'
miRNA:   3'- -CGGUGUaGGCGAGGGa---GCCGC-CGGag -5'
29638 3' -62.1 NC_006151.1 + 83339 0.67 0.570489
Target:  5'- gGCgCGCGUCCacguGCUCCC-CGGCGcGCg-- -3'
miRNA:   3'- -CG-GUGUAGG----CGAGGGaGCCGC-CGgag -5'
29638 3' -62.1 NC_006151.1 + 118337 0.67 0.570489
Target:  5'- cGCCGCGcCCGCcCUCUCG-CGcGCCUg -3'
miRNA:   3'- -CGGUGUaGGCGaGGGAGCcGC-CGGAg -5'
29638 3' -62.1 NC_006151.1 + 70675 0.67 0.570489
Target:  5'- cGCCGCcggcgagcgcuUCCuGCUCuaccgccccuCCUCGGUGGCCa- -3'
miRNA:   3'- -CGGUGu----------AGG-CGAG----------GGAGCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 139583 0.67 0.560765
Target:  5'- cGCCugGgcUCgCGCcccCCCgagCGGCGGCC-Cg -3'
miRNA:   3'- -CGGugU--AG-GCGa--GGGa--GCCGCCGGaG- -5'
29638 3' -62.1 NC_006151.1 + 123892 0.67 0.551086
Target:  5'- cGCCGCGgccCCGCcgUgCggcgCGGCGGCCg- -3'
miRNA:   3'- -CGGUGUa--GGCGa-GgGa---GCCGCCGGag -5'
29638 3' -62.1 NC_006151.1 + 84188 0.67 0.551086
Target:  5'- cGCCGCcgCCGUgccCCCg-GGCGGCg-- -3'
miRNA:   3'- -CGGUGuaGGCGa--GGGagCCGCCGgag -5'
29638 3' -62.1 NC_006151.1 + 134952 0.67 0.551086
Target:  5'- gGCUACAUCuUGCaggCCUCGGCcaGCCUCc -3'
miRNA:   3'- -CGGUGUAG-GCGag-GGAGCCGc-CGGAG- -5'
29638 3' -62.1 NC_006151.1 + 48643 0.67 0.545304
Target:  5'- cGCCACcgCCGCUgcagcagcagccCCCgccggggcaggggcCGG-GGCCUCg -3'
miRNA:   3'- -CGGUGuaGGCGA------------GGGa-------------GCCgCCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.