Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29638 | 3' | -62.1 | NC_006151.1 | + | 103183 | 0.67 | 0.54146 |
Target: 5'- cGCCAUggaCGCcgCCCU-GGCGGCCg- -3' miRNA: 3'- -CGGUGuagGCGa-GGGAgCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 67995 | 0.67 | 0.54146 |
Target: 5'- cGCCgGCG-CCGCggCCacgggCUCGGCGGCgUCc -3' miRNA: 3'- -CGG-UGUaGGCGa-GG-----GAGCCGCCGgAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 107504 | 0.67 | 0.54146 |
Target: 5'- cGCCGCcgGUCgacccgcccaCGCUCCCgccguuggcccCGGCGGCCcCg -3' miRNA: 3'- -CGGUG--UAG----------GCGAGGGa----------GCCGCCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 17330 | 0.67 | 0.54146 |
Target: 5'- cGCCGCGUCaGCUCgugcgUCUCGGUGGUg-- -3' miRNA: 3'- -CGGUGUAGgCGAG-----GGAGCCGCCGgag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 101843 | 0.67 | 0.531889 |
Target: 5'- cGCCGCccCCGC-CCCggcaccCGGCGGCg-- -3' miRNA: 3'- -CGGUGuaGGCGaGGGa-----GCCGCCGgag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 62008 | 0.67 | 0.531889 |
Target: 5'- gGUgACGUgCGCgccgCCCU-GGCGGCCa- -3' miRNA: 3'- -CGgUGUAgGCGa---GGGAgCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 5902 | 0.68 | 0.522381 |
Target: 5'- cGCUGCGagUGCUgCCggggUCGGCGGCCg- -3' miRNA: 3'- -CGGUGUagGCGAgGG----AGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 49952 | 0.68 | 0.522381 |
Target: 5'- aCCugG-CCGCggCCCU-GGcCGGCCUCc -3' miRNA: 3'- cGGugUaGGCGa-GGGAgCC-GCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 101810 | 0.68 | 0.522381 |
Target: 5'- cGCCccCGUccCCGCcgUCCCcgucUCGGCGGCCg- -3' miRNA: 3'- -CGGu-GUA--GGCG--AGGG----AGCCGCCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 86186 | 0.68 | 0.512939 |
Target: 5'- cGCCGCG-CUGC-CCC-CGGCgGGCC-Cg -3' miRNA: 3'- -CGGUGUaGGCGaGGGaGCCG-CCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 58906 | 0.68 | 0.512939 |
Target: 5'- gGCCGCGcacaCgCGCUCCCcCGccGCGGCCgUCa -3' miRNA: 3'- -CGGUGUa---G-GCGAGGGaGC--CGCCGG-AG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 128774 | 0.68 | 0.512939 |
Target: 5'- --gGCGUaCCGCUCcacggCCUCGGUcGCCUCg -3' miRNA: 3'- cggUGUA-GGCGAG-----GGAGCCGcCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 109665 | 0.68 | 0.512939 |
Target: 5'- cGCCACcgCCGCcCCCUCaGCcGCUa- -3' miRNA: 3'- -CGGUGuaGGCGaGGGAGcCGcCGGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 122892 | 0.68 | 0.503568 |
Target: 5'- gGCCAa--CCGCgacgCCCUCGaGCG-CCUCc -3' miRNA: 3'- -CGGUguaGGCGa---GGGAGC-CGCcGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 54103 | 0.68 | 0.503568 |
Target: 5'- gGCCAUGUCgGCUgCgaCGGCGGCg-- -3' miRNA: 3'- -CGGUGUAGgCGAgGgaGCCGCCGgag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 26363 | 0.68 | 0.503568 |
Target: 5'- gGCCGCGUCggggcgCGCgUCCCcCGGCGGgCg- -3' miRNA: 3'- -CGGUGUAG------GCG-AGGGaGCCGCCgGag -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 104367 | 0.68 | 0.503568 |
Target: 5'- cGCCgACAcggagCCGCUCUCgCGGCuGGCC-Cg -3' miRNA: 3'- -CGG-UGUa----GGCGAGGGaGCCG-CCGGaG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 119092 | 0.68 | 0.500771 |
Target: 5'- gGCCGCGg-CGCUCggcgcguacgugagCCgcgCGGcCGGCCUCg -3' miRNA: 3'- -CGGUGUagGCGAG--------------GGa--GCC-GCCGGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 53625 | 0.68 | 0.497981 |
Target: 5'- aCCAgGUCgCGCUUCUgcagcucgcgcaccgUCGGCGGgCUCg -3' miRNA: 3'- cGGUgUAG-GCGAGGG---------------AGCCGCCgGAG- -5' |
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29638 | 3' | -62.1 | NC_006151.1 | + | 52018 | 0.68 | 0.494272 |
Target: 5'- cGCCGCG-CCaGCU-CCUCGGCgaaGGCCg- -3' miRNA: 3'- -CGGUGUaGG-CGAgGGAGCCG---CCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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